View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_high_16 (Length: 533)

Name: NF5654_2D_high_16
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_high_16
NF5654_2D_high_16
[»] chr8 (4 HSPs)
chr8 (1-234)||(7384806-7385039)
chr8 (295-502)||(7384538-7384745)
chr8 (142-210)||(5493959-5494027)
chr8 (30-77)||(7385043-7385090)
[»] chr6 (3 HSPs)
chr6 (83-206)||(11008728-11008851)
chr6 (83-129)||(12185776-12185822)
chr6 (142-203)||(25374286-25374347)
[»] chr4 (7 HSPs)
chr4 (88-205)||(54877300-54877424)
chr4 (89-224)||(27381973-27382116)
chr4 (143-214)||(5409264-5409336)
chr4 (142-210)||(36622062-36622130)
chr4 (148-205)||(45984219-45984276)
chr4 (142-213)||(20032751-20032822)
chr4 (84-152)||(26711543-26711611)
[»] chr3 (8 HSPs)
chr3 (86-208)||(5050575-5050705)
chr3 (142-226)||(44672346-44672430)
chr3 (82-213)||(50129052-50129192)
chr3 (81-215)||(33753404-33753546)
chr3 (85-147)||(34268915-34268977)
chr3 (114-147)||(53092415-53092448)
chr3 (142-226)||(11076903-11076987)
chr3 (96-152)||(51988195-51988251)
[»] chr2 (6 HSPs)
chr2 (100-173)||(3770045-3770118)
chr2 (83-224)||(37980330-37980479)
chr2 (85-152)||(41855265-41855332)
chr2 (143-206)||(12553650-12553713)
chr2 (88-213)||(33451249-33451375)
chr2 (142-226)||(13748141-13748226)
[»] chr5 (8 HSPs)
chr5 (85-152)||(27555190-27555257)
chr5 (142-208)||(19521496-19521562)
chr5 (83-152)||(15264580-15264649)
chr5 (142-182)||(23263039-23263079)
chr5 (93-191)||(9330601-9330704)
chr5 (83-117)||(40040571-40040605)
chr5 (142-191)||(523717-523766)
chr5 (99-140)||(19532055-19532096)
[»] scaffold0655 (1 HSPs)
scaffold0655 (83-152)||(1754-1823)
[»] chr1 (5 HSPs)
chr1 (83-209)||(34967642-34967775)
chr1 (145-224)||(45948883-45948962)
chr1 (105-152)||(13394800-13394847)
chr1 (150-212)||(34462819-34462881)
chr1 (142-203)||(42884312-42884373)
[»] chr7 (7 HSPs)
chr7 (145-208)||(41652006-41652069)
chr7 (91-209)||(18699956-18700082)
chr7 (82-191)||(46276954-46277069)
chr7 (142-203)||(8461566-8461627)
chr7 (83-111)||(14602146-14602174)
chr7 (83-111)||(16022168-16022196)
chr7 (100-140)||(34733892-34733932)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7385039 - 7384806
Alignment:
Q  1 gcatttcccgtattctatgtttagtttctaaaccacaataagaacgaaacaatgtttaaaatacgggaaatgctaaccatagggcacaagtttagaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7385039 gcatttcccgtattctatgtttagtttctaaaccacaataagaacgaaacaatgtttaaaatacgggaaatgctaaccatagggcacaagtttagaaact 7384940  T
Q  101 aaacatagaaatattttcttaaaaattgtatatttaatgtattaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaa 200  Q
    ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7384939 aaacatagaaacattttcttaaaaattgtatattcaatgtattgaaattttatcttttcaatacaaaagttatatttcaattccctttttagcttattaa 7384840  T
Q  201 cttgtgccctaagaaaacaagttagcctaacctt 234  Q
    ||||||| ||||||||| |||||||| |||||||    
T  7384839 cttgtgctctaagaaaataagttagcataacctt 7384806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 295 - 502
Target Start/End: Complemental strand, 7384745 - 7384538
Alignment:
Q  295 catgaatttcaaatcttatcatttcaattaatatcctcacaagaagagtagtagatcttgtggacaaacaacactatagttttgacaacttcgaagattt 394  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7384745 catgaatttcaaatcttatcatttcaattaatatcctcataagaagagtagtagatcttgtggacaaacaacactatagttttgacaacttcgaagattt 7384646  T
Q  395 caaagtctaatctaatatatgatgcgcaacctttgatattgaaccgggacaaaaatgttgaattaatccatctcattaaccaacttcaagtgcttgatcc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7384645 caaagtctaatctaatatatgatgcgcaacctttgatattgaaccgggacaaaaatgttgaattaatccatctcattaaccaacctcaagtgcttgatcc 7384546  T
Q  495 tctcaaat 502  Q
    ||||||||    
T  7384545 tctcaaat 7384538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 5493959 - 5494027
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccct 210  Q
    |||||||||||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||||||    
T  5493959 ttaaaattttatcttttcaatacaaaagttattttttaatcccatttttaacttcttaactcgtgccct 5494027  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7385043 - 7385090
Alignment:
Q  30 aaaccacaataagaacgaaacaatgtttaaaatacgggaaatgctaac 77  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7385043 aaaccacaataagaacgaaacaatgattaaaatacggaaaatgctaac 7385090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 11008728 - 11008851
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaattttatcttttcaatacaaaagttatatttcaatt 182  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||  ||| ||| ||||||||   | ||||||||||||||||||||||||| ||||    
T  11008728 ggcacaagtttagaaactaaacatagaaacattttcttgaaaattgtgcattcaatttattaaaaaaatttcttttcaatacaaaagttatattttaatt 11008827  T
Q  183 ccttttttaacttattaacttgtg 206  Q
    |  |||||| ||| ||||||||||    
T  11008828 ctctttttagcttcttaacttgtg 11008851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 12185822 - 12185776
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgt 129  Q
    |||||||||| |||||||||| ||||||||||||| || ||||||||    
T  12185822 ggcacaagttaagaaactaaaaatagaaatattttgttgaaaattgt 12185776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 25374286 - 25374347
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaactt 203  Q
    |||||||||||||||| | ||||||||||||| ||| | |||| |||||| ||| |||||||    
T  25374286 ttaaaattttatctttcctatacaaaagttatcttttacttccatttttagcttcttaactt 25374347  T

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Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 54877424 - 54877300
Alignment:
Q  88 aagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaat-------tttatcttttcaatacaaaagttatatttcaa 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||| |||||       ||||||||||||||||||||||||||||| ||    
T  54877424 aagtttagaaactaaacatagaaatattttcttgaaaattgtgcattcaatgtataaaaatcttaaattttatcttttcaatacaaaagttatattttaa 54877325  T
Q  181 ttccttttttaacttattaacttgt 205  Q
    |||  |||||| ||| |||||||||    
T  54877324 ttctctttttagctttttaacttgt 54877300  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 27382116 - 27381973
Alignment:
Q  89 agtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtatta--------aaattttatcttttcaatacaaaagttatatttcaa 180  Q
    |||||||||||||||||||||||  |||||||  |||||||||||| ||| |||||        ||||||| ||||||||||| ||||||||  ||| ||    
T  27382116 agtttagaaactaaacatagaaactttttcttggaaattgtatattcaatatattaaaagtttgaaattttgtcttttcaatataaaagttactttttaa 27382017  T
Q  181 ttccttttttaacttattaacttgtgccctaagaaaacaagtta 224  Q
    |||| ||||||  || |||||||||||||| || | ||||||||    
T  27382016 ttccatttttagtttcttaacttgtgcccttaggacacaagtta 27381973  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 5409336 - 5409264
Alignment:
Q  143 taaaattttatcttttcaatacaaaa-gttatatttcaattccttttttaacttattaacttgtgccctaaga 214  Q
    ||||||||||||||||||||| |||| ||||||||| |||||  ||||||  || ||||||||||||||||||    
T  5409336 taaaattttatcttttcaataaaaaaagttatattttaattctctttttaggttcttaacttgtgccctaaga 5409264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 36622130 - 36622062
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccct 210  Q
    |||||||||||||||| |||||||  |||||||||| |||||  ||||| |||| ||||||||||||||    
T  36622130 ttaaaattttatctttacaatacagcagttatattttaattctctttttgacttcttaacttgtgccct 36622062  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 45984276 - 45984219
Alignment:
Q  148 ttttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgt 205  Q
    ||||||||||||||||||||||| || ||| | |||| |||||||||| |||||||||    
T  45984276 ttttatcttttcaatacaaaagtcatcttttatttccctttttaacttcttaacttgt 45984219  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 20032751 - 20032822
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaag 213  Q
    |||||||||||| ||||||||  ||||||||| ||| |||| | ||||||  || |||||||||||||||||    
T  20032751 ttaaaattttatattttcaatgtaaaagttatcttttaatttcatttttagtttcttaacttgtgccctaag 20032822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 26711543 - 26711611
Alignment:
Q  84 gcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    ||||||||| | |||||||| |||||| | |||||||||||  |||||||| ||||| |||||| ||||    
T  26711543 gcacaagttaaaaaactaaagatagaagtcttttcttaaaacatgtatattcaatgttttaaaagttta 26711611  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 5050705 - 5050575
Alignment:
Q  86 acaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta--------tcttttcaatacaaaagttatattt 177  Q
    ||||||||||||  ||||||||||||||||||||||||||||||  ||| ||| |||||||| ||||        |||||||||||||||||||| ||||    
T  5050705 acaagtttagaagttaaacatagaaatattttcttaaaaattgtgcattcaatatattaaaaatttaaaattttgtcttttcaatacaaaagttacattt 5050606  T
Q  178 caattccttttttaacttattaacttgtgcc 208  Q
     |||||| ||||||  || ||||||||||||    
T  5050605 taattccatttttagttttttaacttgtgcc 5050575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 44672430 - 44672346
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaagaaaacaagttagc 226  Q
    ||||||||| ||||||||||||||| |||||||||| ||||   ||||||| || |||| |||||||||||||| ||||||||||    
T  44672430 ttaaaatttaatcttttcaatacaacagttatattttaattttctttttaatttcttaagttgtgccctaagaacacaagttagc 44672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 50129052 - 50129192
Alignment:
Q  82 gggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa--------ttttatcttttcaata-caaaagtta 172  Q
    ||||| ||||||||||||||||||||||||  |||| || ||||||||  ||| ||| ||||||||        |||||||||||||||| |||||||||    
T  50129052 gggcataagtttagaaactaaacatagaaacctttttttgaaaattgtgcattcaatatattaaaagtttgaaattttatcttttcaataacaaaagtta 50129151  T
Q  173 tatttcaattccttttttaacttattaacttgtgccctaag 213  Q
    | ||| |||||| ||||||  || |||||||||||||||||    
T  50129152 ttttttaattccatttttagtttcttaacttgtgccctaag 50129192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 33753404 - 33753546
Alignment:
Q  81 agggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtatta--------aaattttatcttttcaatacaaaagtta 172  Q
    |||||||||||||| ||||||||||||||| | |||||||   ||||||| ||| | |||||||        ||| ||||| |||||||| | |||||||    
T  33753404 agggcacaagtttaaaaactaaacatagaatttttttcttgggaattgtacattcattgtattaaaagtttgaaaatttattttttcaatgctaaagtta 33753503  T
Q  173 tatttcaattccttttttaacttattaacttgtgccctaagaa 215  Q
    | ||| |||||| ||||||  || |||||||||||||||||||    
T  33753504 tcttttaattccatttttagtttcttaacttgtgccctaagaa 33753546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 34268915 - 34268977
Alignment:
Q  85 cacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa 147  Q
    |||||||||| | ||||||||||||||| ||||||| | ||||||| ||| | ||||||||||    
T  34268915 cacaagtttaaagactaaacatagaaattttttcttgagaattgtacattcattgtattaaaa 34268977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 53092415 - 53092448
Alignment:
Q  114 ttttcttaaaaattgtatatttaatgtattaaaa 147  Q
    |||||||||||||||| |||||||||||||||||    
T  53092415 ttttcttaaaaattgtgtatttaatgtattaaaa 53092448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 11076987 - 11076903
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaagaaaacaagttagc 226  Q
    ||||||| |||| ||||||| |||||| |||| ||| |||||| ||||||  || |||||||||||| |||  | ||||||||||    
T  11076987 ttaaaatcttatattttcaagacaaaatttatgttttaattccatttttagattcttaacttgtgccttaacgacacaagttagc 11076903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 51988251 - 51988195
Alignment:
Q  96 aaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    |||||||||||||| |  ||||||| ||||||||| ||||| |||||||||| ||||    
T  51988251 aaactaaacatagatactttttcttgaaaattgtacatttattgtattaaaagttta 51988195  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 3770045 - 3770118
Alignment:
Q  100 taaacatagaaatattttcttaaaaattgtatatttaatgtattaaaattttatcttttcaatacaaaagttat 173  Q
    |||||||||||| ||||||||  ||||| |  ||| ||||||||||||||||||||||||||||||||||||||    
T  3770045 taaacatagaaacattttcttggaaattatgcattcaatgtattaaaattttatcttttcaatacaaaagttat 3770118  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 37980330 - 37980479
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa--------ttttatcttttcaatacaaaagttata 174  Q
    ||||||||||||||| ||||||||| |||  |||||||| |||||||  ||| ||| ||||||||        |||||| ||||||||||||||||||      
T  37980330 ggcacaagtttagaagctaaacatataaaccttttcttagaaattgtgcattcaatatattaaaagtttgaaattttatattttcaatacaaaagttact 37980429  T
Q  175 tttcaattccttttttaacttattaacttgtgccctaagaaaacaagtta 224  Q
    ||| |||||| ||||||  || |||||||||||||| || | ||||||||    
T  37980430 ttttaattccatttttagtttcttaacttgtgcccttaggacacaagtta 37980479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 41855265 - 41855332
Alignment:
Q  85 cacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    |||||||| |||| ||||| ||| |||||||||||| |||||||| |||||||||| |||||| ||||    
T  41855265 cacaagttaagaagctaaagatataaatattttcttgaaaattgtgtatttaatgttttaaaaattta 41855332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 12553650 - 12553713
Alignment:
Q  143 taaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtg 206  Q
    ||||||||||||||||||||||||||||||  ||| ||||   |||||| ||| ||||||||||    
T  12553650 taaaattttatcttttcaatacaaaagttactttttaattttctttttatcttgttaacttgtg 12553713  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 33451249 - 33451375
Alignment:
Q  88 aagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa-ttttatcttttcaatacaaaagttatatttcaattcctt 186  Q
    ||||||||||  ||| |||||||| | ||||||  |||||||  ||| | | |||||||| ||||| |||||||||||||||||||| ||| ||||   |    
T  33451249 aagtttagaagttaagcatagaaacactttcttggaaattgtgcattcattatattaaaagttttaccttttcaatacaaaagttattttttaattttat 33451348  T
Q  187 ttttaacttattaacttgtgccctaag 213  Q
    |||||  || |||||||||| ||||||    
T  33451349 ttttagtttcttaacttgtgtcctaag 33451375  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 13748141 - 13748226
Alignment:
Q  142 ttaaaattttatctttt-caatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaagaaaacaagttagc 226  Q
    ||||||||||||||||| |||||||| | || |  |||| || |||||||| ||| |||||||||||||| ||  |||||||||||    
T  13748141 ttaaaattttatctttttcaatacaacatttgttcttcattttcttttttagcttcttaacttgtgcccttagggaacaagttagc 13748226  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 27555190 - 27555257
Alignment:
Q  85 cacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    ||||||||||||| | ||||||||||||| |||||| ||||||||  ||| |||||||||||||||||    
T  27555190 cacaagtttagaagccaaacatagaaataatttcttgaaaattgtgcattcaatgtattaaaatttta 27555257  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 19521496 - 19521562
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgcc 208  Q
    |||||||||| ||||||||||||||||||||| ||| |||||| ||||||| || ||||||| ||||    
T  19521496 ttaaaattttgtcttttcaatacaaaagttattttttaattccatttttaattttttaacttctgcc 19521562  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 15264580 - 15264649
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    ||||||| ||||||||||||||||||||||||||| ||  ||||| |  ||| |||||||||||||||||    
T  15264580 ggcacaaatttagaaactaaacatagaaatatttttttcgaaattttgcattcaatgtattaaaatttta 15264649  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 23263039 - 23263079
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaatt 182  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  23263039 ttaaaattttatattttcaatacaaaagttatattttaatt 23263079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 9330704 - 9330601
Alignment:
Q  93 tagaaactaaacatagaaatattttcttaaaaattgtatatttaatgt-----attaaaattttatcttttcaatacaaaagttatatttcaattccttt 187  Q
    |||||||||||||||||||  ||||||| |||||||||  || | |||     ||||||||||||| | |||||| |||||||||| ||| |||||| ||    
T  9330704 tagaaactaaacatagaaactttttcttgaaaattgtactttcattgtattaaattaaaattttatatattcaatgcaaaagttatcttttaattccatt 9330605  T
Q  188 ttta 191  Q
    ||||    
T  9330604 ttta 9330601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 40040605 - 40040571
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatatttt 117  Q
    ||||||||||||||||||||||||| |||||||||    
T  40040605 ggcacaagtttagaaactaaacataaaaatatttt 40040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 523717 - 523766
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattcctttttta 191  Q
    |||||| ||||| ||||||||||||||||||| ||| ||||| |||||||    
T  523717 ttaaaaatttatattttcaatacaaaagttatgttttaattcttttttta 523766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 19532096 - 19532055
Alignment:
Q  99 ctaaacatagaaatattttcttaaaaattgtatatttaatgt 140  Q
    |||||||| |||||| |||||||||| |||||||||||||||    
T  19532096 ctaaacattgaaataatttcttaaaacttgtatatttaatgt 19532055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 1823 - 1754
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    ||||||||||||||||||||||||| ||| | ||| || |||||||| |||||||| |||||||| ||||    
T  1823 ggcacaagtttagaaactaaacataaaaaaaatttattgaaaattgtgtatttaatatattaaaagttta 1754  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 34967642 - 34967775
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgta--------ttaaaattttatcttttcaatacaaaagttata 174  Q
    |||||||||||| ||||||||||||||||| ||||||| | ||||||| ||| | ||||        |||||||||||| |||||||| ||||||||||     
T  34967642 ggcacaagtttaaaaactaaacatagaaat-ttttcttgagaattgtacattcattgtattaaaagtttaaaattttatattttcaatgcaaaagttatc 34967740  T
Q  175 tttcaattccttttttaacttattaacttgtgccc 209  Q
    ||| |||||  ||||||  || |||||||||||||    
T  34967741 ttttaattctatttttagtttcttaacttgtgccc 34967775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 45948962 - 45948883
Alignment:
Q  145 aaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaagaaaacaagtta 224  Q
    ||||||| |||||||||||||||| |||  ||| |||||| ||||||  || |||||||||||||| || ||||||||||    
T  45948962 aaattttgtcttttcaatacaaaatttactttttaattccatttttagtttcttaacttgtgcccttaggaaacaagtta 45948883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 13394800 - 13394847
Alignment:
Q  105 atagaaatattttcttaaaaattgtatatttaatgtattaaaatttta 152  Q
    ||||||||||||| | |||||||||||||||||||| |||||| ||||    
T  13394800 atagaaatattttataaaaaattgtatatttaatgttttaaaagttta 13394847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 34462819 - 34462881
Alignment:
Q  150 ttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgccctaa 212  Q
    |||| ||||||||||||||||||| ||| ||||| ||||||||    ||||||||||||||||    
T  34462819 ttatattttcaatacaaaagttatgttttaattctttttttaaaaccttaacttgtgccctaa 34462881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 42884373 - 42884312
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaactt 203  Q
    |||||||||||| ||||| || |||||||||| ||| |||||| ||||||| || |||||||    
T  42884373 ttaaaattttatattttcgatgcaaaagttatcttttaattccatttttaattttttaactt 42884312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 41652069 - 41652006
Alignment:
Q  145 aaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaacttgtgcc 208  Q
    ||||||||||||||||||||||||||||  ||| |||||| ||||||  || ||||||||||||    
T  41652069 aaattttatcttttcaatacaaaagttactttttaattccatttttagtttcttaacttgtgcc 41652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 18699956 - 18700082
Alignment:
Q  91 tttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa--------ttttatcttttcaatacaaaagttatatttcaatt 182  Q
    |||||||||||||| ||||||  |||||||  |||||||| ||| ||| ||||||||        |||| ||||||||||||||||||||  ||| ||||    
T  18699956 tttagaaactaaacctagaaactttttcttggaaattgtacattcaatatattaaaagtttgaaattttgtcttttcaatacaaaagttactttttaatt 18700055  T
Q  183 ccttttttaacttattaacttgtgccc 209  Q
    || ||||||  || |||||||||||||    
T  18700056 ccatttttagtttcttaacttgtgccc 18700082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 46277069 - 46276954
Alignment:
Q  82 gggcacaagtttagaaactaaacatagaaatattttcttaaaaattgtatatttaatgtattaaaa--------ttttatcttttcaatacaaaagttat 173  Q
    ||||||||||||||||||||||||||  ||  |||| ||  |||||||| ||||||| ||||||||        |||| |||||||||||||||||||||    
T  46277069 gggcacaagtttagaaactaaacata--aacttttttttggaaattgtacatttaatatattaaaagtttgaaattttgtcttttcaatacaaaagttat 46276972  T
Q  174 atttcaattcctttttta 191  Q
     ||| |||||| ||||||    
T  46276971 tttttaattccattttta 46276954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 8461566 - 8461627
Alignment:
Q  142 ttaaaattttatcttttcaatacaaaagttatatttcaattccttttttaacttattaactt 203  Q
    ||||||||||||| |||||||||||||||||  | | |||| ||||||||| || |||||||    
T  8461566 ttaaaattttatcctttcaatacaaaagttaactcttaatttcttttttaattttttaactt 8461627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 14602174 - 14602146
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaa 111  Q
    |||||||||||||||||||||||||||||    
T  14602174 ggcacaagtttagaaactaaacatagaaa 14602146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 16022196 - 16022168
Alignment:
Q  83 ggcacaagtttagaaactaaacatagaaa 111  Q
    |||||||||||||||||||||||||||||    
T  16022196 ggcacaagtttagaaactaaacatagaaa 16022168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 34733892 - 34733932
Alignment:
Q  100 taaacatagaaatattttcttaaaaattgtatatttaatgt 140  Q
    |||| |||||||||||||||||||| |||| ||||||||||    
T  34733892 taaagatagaaatattttcttaaaacttgtgtatttaatgt 34733932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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