View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_27 (Length: 461)
Name: NF5654_2D_high_27
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 7078942 - 7078502
Alignment:
| Q |
15 |
acatcatggtcataagatagcaaccacacatatactcaatcaacaaagatttttgtttttgtggagatatcttg-------tgctcctcaatccatgaga |
107 |
Q |
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| T |
7078942 |
acattatggtcataagatagcaaccacatatatactcaatcaacaaagatttttgtttttgtggagatatcttgactcttgtgctcctcaatccatgaga |
7078843 |
T |
|
| Q |
108 |
atcataactttattttttgtttatgtcacacttttgcttatttcaaaaccaaaaggtgtagttgcaattgcaagcataattccaattccaaacaaccaat |
207 |
Q |
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| T |
7078842 |
atcataactttattttttgtttatgtcacacttttgcttatttcaaaaccaaaaggtgtagttgcaattgcaagcataattccaattccaaacaaccaat |
7078743 |
T |
|
| Q |
208 |
actattctacatgtcctgtcatattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcg |
307 |
Q |
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| T |
7078742 |
actattctacatgtcctgtcatattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcg |
7078643 |
T |
|
| Q |
308 |
caaacacttccttagccatgtcctcgacgctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaatt |
407 |
Q |
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| T |
7078642 |
caaacacttccttagccatgtcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaatt |
7078543 |
T |
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| Q |
408 |
caaagagcaattgaaaaatcattcatttcgttggttatatt |
448 |
Q |
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| T |
7078542 |
caaagagcaattgaaaaatcattcatttcattggttatatt |
7078502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 228 - 449
Target Start/End: Original strand, 7028506 - 7028727
Alignment:
| Q |
228 |
atattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatg |
327 |
Q |
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| T |
7028506 |
atattttctccttctacttctatccctgcacctcagataaaatatgatgtctttgttagctttagaggtagtgacattcgcaaaaatttccttagccatg |
7028605 |
T |
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| Q |
328 |
tcctcgacgctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatc |
427 |
Q |
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| T |
7028606 |
tcctcgacgctttgtcgcgaaagggaatcattgttttttctgacaaaaagctaataacaggagacgaattatcagcaattcaaagagcaattgaaaaatc |
7028705 |
T |
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| Q |
428 |
attcatttcgttggttatattt |
449 |
Q |
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| T |
7028706 |
attgatttcattggtcatattt |
7028727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 228 - 449
Target Start/End: Original strand, 7035208 - 7035429
Alignment:
| Q |
228 |
atattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatg |
327 |
Q |
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|||||||||||| ||| ||| | ||||| ||||||||||||||||||||||||||||||||| || || ||||| ||||||||| | ||||||||||||| |
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| T |
7035208 |
atattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatg |
7035307 |
T |
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| Q |
328 |
tcctcgacgctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatc |
427 |
Q |
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| || || ||||| |||||||||| ||| || || ||||||||||| |||||| | |||||| ||| |||||| | |||| | ||||||||||||||| |
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| T |
7035308 |
ttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagacgaaatatcagaacttcatacagcaattgaaaaatc |
7035407 |
T |
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| Q |
428 |
attcatttcgttggttatattt |
449 |
Q |
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| T |
7035408 |
attgatttcattggtcatattt |
7035429 |
T |
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Back To:
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