View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_28 (Length: 451)
Name: NF5654_2D_high_28
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 173 - 406
Target Start/End: Complemental strand, 9658250 - 9658017
Alignment:
| Q |
173 |
caccatcttagatgtatatgtgtnnnnnnncttttatgtcgacaatgtttgtacaatgtattatccatgattgtgcctcaaattcggttaacatatattc |
272 |
Q |
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| T |
9658250 |
caccatcttagatgtatatgtgtaaaaaaacttttatgtcgacaatgtttgtacaatgtattatccatgattgtgcctcaaattcggttaacatatattc |
9658151 |
T |
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| Q |
273 |
tgtcagctcagttgtttgtacaattcagacgaggtattttagaaagcatgcattgatacgcatatataaaggttgaaactactccattcattacaaacaa |
372 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9658150 |
tgtcagctcagttgtttgtacaatccagacgaggtattttagaaagcatgcattgatacgcatacataaaggttgaaactactccattcattacaaacaa |
9658051 |
T |
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| Q |
373 |
atttggatcatgcatgcagttactcataaaggag |
406 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9658050 |
atttggatcatgcatgcagttactcataaaggag |
9658017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 9658331 - 9658261
Alignment:
| Q |
79 |
cacgcaataatttatgcagggaatttaggtcccttgaagatggctctttgtcctaacggtttatgaatcca |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9658331 |
cacgcaataatttatgcagggaatttaggtcccttgaagatggctctttgtcctaacggtttatgaatcca |
9658261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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