View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_high_29 (Length: 447)

Name: NF5654_2D_high_29
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_high_29
NF5654_2D_high_29
[»] chr2 (17 HSPs)
chr2 (1-293)||(10508805-10509097)
chr2 (7-254)||(10464606-10464853)
chr2 (1-242)||(10546752-10546993)
chr2 (7-243)||(10519481-10519717)
chr2 (7-245)||(10494203-10494441)
chr2 (310-429)||(10509090-10509205)
chr2 (7-247)||(10475884-10476124)
chr2 (1-162)||(10447848-10448009)
chr2 (9-153)||(10864127-10864271)
chr2 (127-246)||(7478921-7479040)
chr2 (40-162)||(10850314-10850436)
chr2 (7-205)||(27969050-27969248)
chr2 (7-205)||(28091339-28091537)
chr2 (7-205)||(28101571-28101769)
chr2 (298-330)||(15305601-15305633)
chr2 (126-205)||(28097674-28097753)
chr2 (299-331)||(4026762-4026794)
[»] chr7 (2 HSPs)
chr7 (7-151)||(1094395-1094539)
chr7 (298-330)||(45806420-45806452)
[»] chr5 (5 HSPs)
chr5 (1-90)||(33577954-33578043)
chr5 (1-90)||(33577404-33577493)
chr5 (297-331)||(35445998-35446032)
chr5 (298-331)||(12554407-12554440)
chr5 (298-330)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (297-331)||(17830097-17830131)
chr1 (297-327)||(37473342-37473372)
chr1 (299-332)||(29904704-29904737)
chr1 (295-327)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (297-331)||(1058167-1058201)
chr8 (298-330)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (297-331)||(8147645-8147679)
chr6 (298-330)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (297-331)||(31851397-31851431)
chr4 (299-331)||(42321972-42322004)
chr4 (298-330)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (297-327)||(20880420-20880450)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 10508805 - 10509097
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508805 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 10508904  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508905 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 10509004  T
Q  201 gaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaatgatgaagaataggcatgcttggataaacagcttatagca 293  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10509005 gaaatcaacacaagcaggtgtgtcaattacgctcatctgcaaggacagaaaaatgatgaagaataggcatgcttggataaacagcttatagca 10509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 10464606 - 10464853
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    ||||||||||||||||||||||||||| | || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10464606 aagtttacctgattcacaacttcccacggatttgctcccttctggtcaagattgttgatgaatacaagtcttggaagttgatatgttaccatttgcttat 10464705  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
      ||| ||||||| |||   |||||||||||||||| |  ||||||||  || ||| |||||||||||||||| ||||| | ||||||||||||||||||    
T  10464706 tgacaacaatggagtggctctgcaccccatcaacactatcaagaacaaatacagcaccgtcaaaggcacgcagcgcattctgaacctcaggagtgaaatc 10464805  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaat 254  Q
    ||||  |  |||||||||||||||  ||||||||||||||||||||||    
T  10464806 aacatgatcaggtgtgtcaattacagtcatctgcaaggacagacaaat 10464853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10546752 - 10546993
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    ||||||||||| |||||||| | ||| |||||| | |  |||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |||||    
T  10546752 aatctaaagttcacctgatttaaaacatcccacggatctgctcccttgttgtcaagattgttgatgtatacaagtcttggaagttgatattttatcattt 10546851  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 200  Q
    |||||||||||| ||||||| ||   | || |||| |||||| ||| ||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||    
T  10546852 gcttatcaacagaaatggacaggctgttcatcccaccaacactagacagaacaaaaacggcagcatcaaaggcacgtagagcattatcaacctcagaagt 10546951  T
Q  201 gaaatcaacacaagaaggtgtgtcaattacgctcatctgcaa 242  Q
    ||| |||||||||  |||||||||||||||||||||||||||    
T  10546952 gaagtcaacacaatcaggtgtgtcaattacgctcatctgcaa 10546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 10519481 - 10519717
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||| | ||||| |||| | || |||||||| ||||||||||  | || ||||||||||||||||||||||||||||| |||||||||||    
T  10519481 aagtttacctgatttaaaacttgccacggatttgctcccttttggtcaagatcattgacgaatacaagtcttggaagttgatatgttatcatttgcttat 10519580  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    | ||||||||||||||||| |||||||||||||| | ||||||||||||||| |||  ||||||||||| ||||||||| | ||| ||||  ||||||||    
T  10519581 ccacagcaatggactggtcctgcaccccatcaacgctagaaagaacaagaacagcactgtcaaaggcacccagagcattcttaacttcagaggtgaaatc 10519680  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaag 243  Q
    || ||||  || |||||| |||| |||||||||||||    
T  10519681 aaaacaattagttgtgtccattatgctcatctgcaag 10519717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 10494203 - 10494441
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  |||||||||||| | |  |||| ||| ||||||||||||| |||||| |||||||||||||||||| ||   | |||||||||||    
T  10494203 aagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttat 10494302  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    |||||| ||||||||||  || ||| ||| |||||| ||||||||||||||| ||| |||||||||||| ||||||||| | |||||||| |||||||||    
T  10494303 caacagaaatggactgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaaggcacacagagcattcttaacctcagtagtgaaatc 10494402  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaagga 245  Q
    ||||| || |||||||||||| ||| |||||||||||||    
T  10494403 aacacgagcaggtgtgtcaatcacggtcatctgcaagga 10494441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 10509090 - 10509205
Alignment:
Q  310 ttatagcaaatgataaaataaataaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 409  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509090 ttatagcaaatgataaaat----aaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 10509185  T
Q  410 atccatttacagtgagaatg 429  Q
    ||||||||||||||||||||    
T  10509186 atccatttacagtgagaatg 10509205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 10475884 - 10476124
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||| ||||  | || |||||||| ||||||||||||| ||| || |||||||||||||||| ||||   | |||||| ||||    
T  10475884 aagtttacctgatataaaactccccatggatttgctcccttatggtcaagattgttgataaaaacaagtcttggaagttcatatcccatcatttgtttat 10475983  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    |||||| |||||| |||   | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||| |||||||||    
T  10475984 caacagaaatggagtggctgttcaccccatcaacaccagaaagaacaagaatggcaccgtcaaaggcacgcagagcattctgaacctcagcagtgaaatc 10476083  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaaggaca 247  Q
    ||||  |  |||||||||||  || ||||||||||| ||||    
T  10476084 aacattatcaggtgtgtcaagcacactcatctgcaatgaca 10476124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 10447848 - 10448009
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    |||||||| ||||||||||||| |||||||||  | || |||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||| |||||    
T  10447848 aatctaaattttacctgattcaaaacttcccatggatttgctcccttgtggtcaagattgttgataaatacaagtcttggaagtttataccttagcattt 10447947  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggca 162  Q
    | | ||||| ||||||||| |||  |||||||||| |||||  | |||||||| ||| ||||    
T  10447948 gttcatcaatagcaatggagtggctttgcaccccaccaacaatacaaagaacatgaatggca 10448009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 10864127 - 10864271
Alignment:
Q  9 gtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttatca 108  Q
    |||||||||||| | ||||| |||  | || ||||||||||||||||| ||||  || |||| ||||||||||||||| ||| ||| ||||| |||||||    
T  10864127 gtttacctgatttaaaacttgccatggatttgctcccttgtggtcaaggttgtttataaatataagtcttggaagttggtatcttatcatttccttatca 10864226  T
Q  109 acagcaatggactggtcttgcaccccatcaacaccagaaagaaca 153  Q
    ||||||||||| |||  |||||||||||  |||||| ||||||||    
T  10864227 acagcaatggagtggctttgcaccccattgacaccacaaagaaca 10864271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 7479040 - 7478921
Alignment:
Q  127 tgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaa 226  Q
    |||||||||||||||| ||||||| ||||||| ||| | ||||||||| |||||||| | | |||||||| |||||||||||||  |  |||||||||||    
T  7479040 tgcaccccatcaacactagaaagatcaagaactgcaccatcaaaggcaggcagagcactcttaacctcagcagtgaaatcaacatgaacaggtgtgtcaa 7478941  T
Q  227 ttacgctcatctgcaaggac 246  Q
    | ||  ||||||||||||||    
T  7478940 tcacagtcatctgcaaggac 7478921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 10850314 - 10850436
Alignment:
Q  40 gctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttatcaacagcaatggactggtcttgcaccccatcaa 139  Q
    ||||||||||||| |||  ||| ||| |||||||||||||||||||||||| ||| |||| ||||||||| || |||||| ||   |||||||||| |||    
T  10850314 gctcccttgtggtgaaggctgttgataaatacaagtcttggaagttgatatcttaacattagcttatcaaaagtaatggattgagtttgcaccccagcaa 10850413  T
Q  140 caccagaaagaacaagaacggca 162  Q
    | | ||||||| |||||| ||||    
T  10850414 cgctagaaagagcaagaatggca 10850436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 27969050 - 27969248
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  27969050 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 27969149  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  27969150 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 27969248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 28091537 - 28091339
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  28091537 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 28091438  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28091437 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28091339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 28101769 - 28101571
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  28101769 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 28101670  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28101669 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28101571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 15305601 - 15305633
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||||||||||||||    
T  15305601 cataagctatttttatagcaaatgataaaataa 15305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 28097753 - 28097674
Alignment:
Q  126 ttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28097753 ttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28097674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 4026762 - 4026794
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaa 331  Q
    ||||||||||||||||||||| |||||||||||    
T  4026762 ataagctatttttatagcaaaagataaaataaa 4026794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 1094539 - 1094395
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  |||||||||||| | |  ||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1094539 aagtttacctgatctacaacttcccacggatctgcttccttgtagtcaagactgttgatgaatacaattcttggaagttgatatgttaccatttgcttat 1094440  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaa 151  Q
    | |||  ||||||| |||| |||||||||||||||| ||||||||    
T  1094439 ccacattaatggacaggtcctgcaccccatcaacactagaaagaa 1094395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 45806452 - 45806420
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  45806452 cataagctatttttatagcaaaagataaaataa 45806420  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33578043 - 33577954
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatat 90  Q
    |||||||| ||||||||||||| |||||||||| | || |||||||||||||||| ||||| ||| ||| |||||||||| |||| ||||    
T  33578043 aatctaaattttacctgattcaaaacttcccacggatttgctcccttgtggtcaacattgttgataaattcaagtcttggtagtttatat 33577954  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33577493 - 33577404
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatat 90  Q
    |||||||| ||||||||||||| |||||||||| | || |||||||||||||||| ||||| ||| |||  ||||||||| |||| ||||    
T  33577493 aatctaaattttacctgattcaaaacttcccacggatttgctcccttgtggtcaacattgttgataaatttaagtcttggtagtttatat 33577404  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 35445998 - 35446032
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||||||||||||||    
T  35445998 acataagctatttttatagcaaatgataaaataaa 35446032  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 12554407 - 12554440
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||| |||||||||||||||    
T  12554407 cataagctatttttatagtaaatgataaaataaa 12554440  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 16458104 - 16458072
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  16458104 cataagctatttttatagcaaaagataaaataa 16458072  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 17830097 - 17830131
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||||||||||||||    
T  17830097 acataagctatttttatagcaaatgataaaataaa 17830131  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 37473342 - 37473372
Alignment:
Q  297 acataagctatttttatagcaaatgataaaa 327  Q
    |||||||||||||||||||||||||||||||    
T  37473342 acataagctatttttatagcaaatgataaaa 37473372  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 29904704 - 29904737
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaat 332  Q
    ||||||||||||||||||||| ||||||||||||    
T  29904704 ataagctatttttatagcaaaagataaaataaat 29904737  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 15609033 - 15609065
Alignment:
Q  295 agacataagctatttttatagcaaatgataaaa 327  Q
    ||||||||||||||||||||||||| |||||||    
T  15609033 agacataagctatttttatagcaaaagataaaa 15609065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 1058201 - 1058167
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||| ||||||||||    
T  1058201 acataagctatttttatagcaaatcataaaataaa 1058167  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 32976004 - 32976036
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  32976004 cataagctatttttatagcaaaagataaaataa 32976036  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 8147645 - 8147679
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    ||||||||||||||||||||||| |||||||||||    
T  8147645 acataagctatttttatagcaaaagataaaataaa 8147679  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 30536422 - 30536454
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    ||||||||||| |||||||||||||||||||||    
T  30536422 cataagctattattatagcaaatgataaaataa 30536454  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 31851397 - 31851431
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||| ||||||||||||||||    
T  31851397 acataagctatttttataacaaatgataaaataaa 31851431  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 42322004 - 42321972
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||| ||||||||||||||||    
T  42322004 ataagctatttttataacaaatgataaaataaa 42321972  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 43505900 - 43505932
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  43505900 cataagctatttttatagcaaaagataaaataa 43505932  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 20880420 - 20880450
Alignment:
Q  297 acataagctatttttatagcaaatgataaaa 327  Q
    |||||||||||||||||||||||||||||||    
T  20880420 acataagctatttttatagcaaatgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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