View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_35 (Length: 367)
Name: NF5654_2D_high_35
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 56069913 - 56069678
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069913 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
56069814 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgt |
200 |
Q |
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| T |
56069813 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacact----ttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgt |
56069718 |
T |
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| Q |
201 |
taatttctcgtttctttccaatttcatcgacgatgtttcc |
240 |
Q |
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| T |
56069717 |
taatttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 56069644 - 56069563
Alignment:
| Q |
241 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcac |
322 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcac |
56069563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 56070251 - 56070282
Alignment:
| Q |
317 |
tggcacaatcatcttgaatttgacttgctttc |
348 |
Q |
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| T |
56070251 |
tggcacaatcatcttgaatttgacttgctttc |
56070282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 38398409 - 38398594
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
38398409 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtat----gaatgtttttgatttagtcgaatggaagaagcaaaa |
38398504 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
195 |
Q |
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| T |
38398505 |
catcacagaggtgtaccacaattggcagaagctggtaag-acact----ttaatctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 38398695 - 38398775
Alignment:
| Q |
241 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggca |
321 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggca |
38398775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 10170533 - 10170667
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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||||||||||||| |||||||||||||||| |||| ||||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||| |||||| |
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| T |
10170533 |
ctcaaatcctcttattgcaaagaattttgatcctcatgcttgtgggtgggcctacggaatg----aatgtatttgatttagtccaatggaagaggcaaaa |
10170628 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaag |
139 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |
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| T |
10170629 |
gatcacagaggtgtaccacaactggcagaatttggtaag |
10170667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 10171013 - 10171075
Alignment:
| Q |
248 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaac |
310 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaac |
10171075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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