View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_41 (Length: 349)
Name: NF5654_2D_high_41
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 49694978 - 49694661
Alignment:
| Q |
14 |
gaaaacgaagatgatgacgaagaagatggtggtgaaatcatgaatgttgtgagagtaccggagaatgttgtcctcgcaccgagaattaaggtgctggacg |
113 |
Q |
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| T |
49694978 |
gaaaacgaagatgatgacgaagaagatggtggtgaaatcatgaatgttgtgagagtaccggagaatgttgtcctcgcaccgagaattaaggtgctggacg |
49694879 |
T |
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| Q |
114 |
ttgaaaaagaaaattctgattcaggttccgatgtttccattgatggagaaggtattggaataagaatagcttgtgatggagactctactgctactgcaac |
213 |
Q |
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| T |
49694878 |
ttgaaaaagaaaattctgattcaggttccgatgtttccattgatggagaaggtattggaataagagtagcttgtgatggagactctactgctactgcaac |
49694779 |
T |
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| Q |
214 |
tgattctgatgttatgtcgcagtattccagagatggtttggagaatgagcaatttgggaaggtaagtgttgcatttaatgaaattgaaaatgatgatatg |
313 |
Q |
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| T |
49694778 |
tgattctgatgttatgtcgcagtattccagagatggtttggagaatgagcaatttgggaaggtaagtgttgcatttaatgaaattgaaaatgatgatatg |
49694679 |
T |
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| Q |
314 |
aaattatatggtttagat |
331 |
Q |
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| T |
49694678 |
aaattatatggtttagat |
49694661 |
T |
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