View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_43 (Length: 320)
Name: NF5654_2D_high_43
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 43244417 - 43244729
Alignment:
| Q |
1 |
tttttatttggtatagataccaattatacatctttgattgggaatatatgttgtgatattgtgcaatatcctttgttgaataaacaaaaaccaattataa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43244417 |
tttttatttggtatagataccaattatatatctttgattgggaatatatgttgtgatattgtgcgatatcctttgttgaataaacaaaaaccaattataa |
43244516 |
T |
|
| Q |
101 |
tttacatttttaacaactatgagcctgtgccctgtggtagtggctg-------atttgttgtatccacgaggagggggctacaaatatatatacgtgaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43244517 |
tttacatttttaacaactatgagcctgtgccctgtggtagtggctgatttgttatttgttgtatccacgaggagggggctacaaatatatatacttgaag |
43244616 |
T |
|
| Q |
194 |
attatacacaacatatgtgcagatcatttggc-----taacatgagatctttcatgacatatactagattcatatcctttgtctctatcccaagtcaatg |
288 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43244617 |
attatacacaacatatgcgcagatcatttggctaacgtaacatgagatctttcatgacatatactcgattcatatcctttgtctctatcccaagtcaatg |
43244716 |
T |
|
| Q |
289 |
caattgtacaaca |
301 |
Q |
| |
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||||| ||||||| |
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| T |
43244717 |
caattatacaaca |
43244729 |
T |
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