View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_47 (Length: 273)
Name: NF5654_2D_high_47
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_47 |
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| [»] chr7 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 27492746 - 27492490
Alignment:
| Q |
17 |
agtttatacataagaacttatatgatatgcgctgataacccaaacagtgcctatataaataggataacagaaataaaacctgccacaagattggtgagat |
116 |
Q |
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| T |
27492746 |
agtttatacataagaacttatatgatatgcgctgataacccaaacagagcctatataaataggataacagaaataaaacctgccacaagattggtgagat |
27492647 |
T |
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| Q |
117 |
taaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatatagttcaggaggacagtaatcaggatccaaaggtgtataattaggc |
216 |
Q |
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| T |
27492646 |
taaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatatagttcaggaggacagtaatcaggatccaaaggtgtataattaggc |
27492547 |
T |
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| Q |
217 |
acataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatc |
273 |
Q |
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| T |
27492546 |
acataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatc |
27492490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 27507827 - 27507721
Alignment:
| Q |
72 |
taaataggataacagaaataaaacctgccacaagattggtgagattaaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatat |
171 |
Q |
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| T |
27507827 |
taaataggataaaagaagtcagacctgccacaatat-ggtgaaagtaaagctgcaattggctatggaggaagacttggtgtttcttgtggtagaagatac |
27507729 |
T |
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| Q |
172 |
agttcagg |
179 |
Q |
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| T |
27507728 |
agttcagg |
27507721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 27495351 - 27495246
Alignment:
| Q |
72 |
taaataggataacagaaataaaacctgccacaagattggtgagattaaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatat |
171 |
Q |
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| T |
27495351 |
taaataggataaaagatgtcagacctgccacaatattggtgag--tcaagctgcaattggctatggaggaagatttggtgtttcttgcggtagaagatac |
27495254 |
T |
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| Q |
172 |
agttcagg |
179 |
Q |
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|||||||| |
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| T |
27495253 |
agttcagg |
27495246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 27502009 - 27501904
Alignment:
| Q |
72 |
taaataggataacagaaataaaacctgccacaagattggtgagattaaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatat |
171 |
Q |
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| T |
27502009 |
taaataggataaaagatgtcagacctgccacaatattggtgag--tcaagctgcaattggctatggaggaagatttggtgtttcttgcggtagaagatac |
27501912 |
T |
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| Q |
172 |
agttcagg |
179 |
Q |
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|||||||| |
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| T |
27501911 |
agttcagg |
27501904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 27516801 - 27516696
Alignment:
| Q |
72 |
taaataggataacagaaataaaacctgccacaagattggtgagattaaagctgcaattggttctggaggaagactttgtgtttcttgtggtagaacatat |
171 |
Q |
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| T |
27516801 |
taaataggataaaagatgtcagacctgccacaatattggtgag--tcaagctgcaattggctatggaggaagatttggtgtttcttgcggtagaagatac |
27516704 |
T |
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| Q |
172 |
agttcagg |
179 |
Q |
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| T |
27516703 |
agttcagg |
27516696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 293501 - 293557
Alignment:
| Q |
217 |
acataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatc |
273 |
Q |
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| T |
293501 |
acataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatc |
293557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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