View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_high_51 (Length: 263)
Name: NF5654_2D_high_51
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 14621156 - 14620934
Alignment:
| Q |
15 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggtttcttgttgtttgtagttataagg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14621156 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatg--------aaatggtttcttgttgtttgtagttataagg |
14621065 |
T |
|
| Q |
115 |
aacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14621064 |
aacggtttctttcttcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
14620965 |
T |
|
| Q |
215 |
taaggtacatttgtaataatctcaacgtaac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14620964 |
taaggtacatttgtaataatctcaacgtaac |
14620934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 17709031 - 17709252
Alignment:
| Q |
15 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggtttcttgttgtttgtagttataagg |
114 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17709031 |
tttgttgtttgaataacgtatgttacgtgtttgataaaatgctgatgtgaatgtgttgatgtcttgatgaagtggtttcttgttgtttgtagttataagg |
17709130 |
T |
|
| Q |
115 |
aacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17709131 |
aacggtttctttcatcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
17709230 |
T |
|
| Q |
215 |
taaggtacatttgtaataatct |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17709231 |
taaggtacatttgtaataatct |
17709252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University