View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_high_59 (Length: 240)

Name: NF5654_2D_high_59
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_high_59
NF5654_2D_high_59
[»] chr8 (30 HSPs)
chr8 (18-224)||(8621579-8621785)
chr8 (45-204)||(7982417-7982570)
chr8 (45-135)||(3094786-3094877)
chr8 (45-135)||(34853429-34853520)
chr8 (42-91)||(36317942-36317991)
chr8 (45-135)||(8885420-8885511)
chr8 (45-96)||(9845327-9845378)
chr8 (45-96)||(33472212-33472263)
chr8 (42-116)||(36980689-36980764)
chr8 (42-120)||(40392652-40392731)
chr8 (18-96)||(7965910-7965988)
chr8 (46-135)||(40994893-40994983)
chr8 (47-96)||(10833484-10833533)
chr8 (46-91)||(31234486-31234531)
chr8 (47-96)||(33472419-33472468)
chr8 (50-102)||(24627709-24627761)
chr8 (49-135)||(9073605-9073692)
chr8 (45-135)||(17119846-17119937)
chr8 (45-135)||(27927908-27927999)
chr8 (45-135)||(42280858-42280949)
chr8 (45-96)||(14164024-14164075)
chr8 (45-96)||(16310740-16310791)
chr8 (45-135)||(28916876-28916967)
chr8 (53-96)||(31234704-31234747)
chr8 (45-88)||(37248707-37248750)
chr8 (50-109)||(41530803-41530862)
chr8 (45-135)||(44106324-44106415)
chr8 (45-91)||(10840724-10840770)
chr8 (47-96)||(4259604-4259653)
chr8 (45-90)||(11698283-11698328)
[»] chr3 (28 HSPs)
chr3 (18-134)||(47979946-47980063)
chr3 (45-121)||(47123141-47123218)
chr3 (45-134)||(3352033-3352123)
chr3 (45-134)||(38977715-38977805)
chr3 (47-135)||(45712053-45712142)
chr3 (45-121)||(47130507-47130584)
chr3 (45-135)||(3902773-3902864)
chr3 (45-96)||(29035940-29035991)
chr3 (45-135)||(33438622-33438713)
chr3 (45-96)||(35142215-35142266)
chr3 (42-77)||(43472933-43472968)
chr3 (45-135)||(50716353-50716444)
chr3 (45-135)||(50796403-50796494)
chr3 (50-96)||(45244531-45244577)
chr3 (47-96)||(8735534-8735583)
chr3 (47-96)||(9087775-9087824)
chr3 (155-224)||(29048388-29048455)
chr3 (42-78)||(30721774-30721810)
chr3 (42-77)||(2358586-2358621)
chr3 (45-135)||(28873106-28873197)
chr3 (49-135)||(34821314-34821401)
chr3 (45-135)||(40062480-40062571)
chr3 (45-96)||(51540581-51540632)
chr3 (50-90)||(8735333-8735373)
chr3 (50-90)||(9087574-9087614)
chr3 (45-89)||(46622762-46622806)
chr3 (45-136)||(47739899-47739991)
chr3 (42-121)||(52777346-52777426)
[»] scaffold0006 (2 HSPs)
scaffold0006 (18-121)||(59912-60014)
scaffold0006 (18-88)||(59509-59577)
[»] chr7 (21 HSPs)
chr7 (18-91)||(48775754-48775827)
chr7 (20-90)||(48776153-48776223)
chr7 (45-135)||(36946259-36946349)
chr7 (45-135)||(42865069-42865160)
chr7 (45-96)||(3936249-3936300)
chr7 (45-135)||(9151897-9151988)
chr7 (45-135)||(28230435-28230526)
chr7 (42-96)||(5278405-5278459)
chr7 (45-121)||(42925608-42925685)
chr7 (45-135)||(1518808-1518899)
chr7 (42-91)||(3304722-3304771)
chr7 (45-78)||(8214468-8214501)
chr7 (45-89)||(8214257-8214301)
chr7 (45-135)||(24042155-24042246)
chr7 (45-91)||(19818526-19818572)
chr7 (42-76)||(31643202-31643236)
chr7 (45-134)||(36408473-36408563)
chr7 (45-134)||(36468504-36468594)
chr7 (45-78)||(43737241-43737274)
chr7 (42-75)||(47202656-47202689)
chr7 (56-96)||(16278247-16278287)
[»] chr5 (33 HSPs)
chr5 (45-96)||(8739155-8739206)
chr5 (45-135)||(31221306-31221397)
chr5 (45-109)||(8973576-8973640)
chr5 (45-135)||(33487673-33487764)
chr5 (45-135)||(37183748-37183839)
chr5 (45-135)||(38692750-38692841)
chr5 (45-121)||(12847520-12847597)
chr5 (47-96)||(34530318-34530367)
chr5 (47-118)||(14111947-14112019)
chr5 (47-134)||(29862676-29862764)
chr5 (45-96)||(6156834-6156885)
chr5 (45-96)||(8738952-8739003)
chr5 (45-135)||(20891676-20891767)
chr5 (45-80)||(23269456-23269491)
chr5 (49-135)||(27158147-27158234)
chr5 (48-91)||(27494123-27494166)
chr5 (45-135)||(31929092-31929182)
chr5 (45-135)||(38871734-38871825)
chr5 (45-91)||(40619957-40620003)
chr5 (47-96)||(40613644-40613693)
chr5 (45-81)||(24203651-24203687)
chr5 (49-135)||(15799288-15799375)
chr5 (45-88)||(38372420-38372463)
chr5 (42-96)||(16429385-16429439)
chr5 (45-75)||(28445176-28445206)
chr5 (54-96)||(28445381-28445423)
chr5 (50-96)||(38641037-38641083)
chr5 (47-96)||(4064689-4064738)
chr5 (45-78)||(7884314-7884347)
chr5 (47-135)||(28083347-28083436)
chr5 (48-135)||(21070429-21070517)
chr5 (48-96)||(27493919-27493967)
chr5 (45-96)||(32841937-32841989)
[»] chr2 (21 HSPs)
chr2 (45-135)||(32187831-32187922)
chr2 (47-96)||(34519501-34519550)
chr2 (45-96)||(33452405-33452456)
chr2 (45-135)||(39447263-39447354)
chr2 (47-135)||(41203150-41203239)
chr2 (45-90)||(42894524-42894569)
chr2 (45-109)||(17766791-17766855)
chr2 (45-135)||(17474761-17474852)
chr2 (45-135)||(19109977-19110068)
chr2 (45-96)||(44465689-44465740)
chr2 (45-96)||(15995075-15995126)
chr2 (47-121)||(34817216-34817291)
chr2 (45-96)||(45153753-45153804)
chr2 (45-134)||(27900576-27900666)
chr2 (45-91)||(36875131-36875177)
chr2 (42-76)||(36948904-36948938)
chr2 (47-96)||(9847176-9847225)
chr2 (49-78)||(9847386-9847415)
chr2 (45-78)||(30763808-30763841)
chr2 (46-134)||(35251032-35251121)
chr2 (45-78)||(41510391-41510424)
[»] chr6 (14 HSPs)
chr6 (45-135)||(14587527-14587618)
chr6 (45-134)||(23406898-23406988)
chr6 (45-121)||(236909-236986)
chr6 (45-96)||(2539592-2539643)
chr6 (45-96)||(5699706-5699757)
chr6 (45-96)||(21514998-21515049)
chr6 (47-135)||(4508271-4508360)
chr6 (45-121)||(34528555-34528632)
chr6 (42-78)||(32044541-32044577)
chr6 (45-96)||(1945497-1945548)
chr6 (45-135)||(17264511-17264602)
chr6 (45-91)||(6704093-6704139)
chr6 (49-109)||(17500994-17501054)
chr6 (50-78)||(17501240-17501268)
[»] chr4 (25 HSPs)
chr4 (45-135)||(40703773-40703864)
chr4 (45-96)||(41323059-41323110)
chr4 (49-135)||(2506002-2506089)
chr4 (45-96)||(17933104-17933155)
chr4 (45-135)||(19835629-19835720)
chr4 (45-96)||(25140473-25140524)
chr4 (45-135)||(25491362-25491453)
chr4 (45-135)||(48319031-48319122)
chr4 (45-135)||(53893992-53894083)
chr4 (42-96)||(7863590-7863644)
chr4 (50-96)||(25140894-25140940)
chr4 (42-91)||(32441964-32442013)
chr4 (155-223)||(18487711-18487777)
chr4 (42-77)||(6228777-6228812)
chr4 (45-96)||(7931806-7931857)
chr4 (45-96)||(25752411-25752462)
chr4 (42-77)||(34973032-34973067)
chr4 (45-96)||(38536319-38536370)
chr4 (42-77)||(49397180-49397215)
chr4 (50-96)||(25140687-25140733)
chr4 (42-91)||(41413062-41413111)
chr4 (47-96)||(55052588-55052637)
chr4 (42-78)||(6003637-6003673)
chr4 (50-78)||(42660347-42660375)
chr4 (45-97)||(47784137-47784188)
[»] chr1 (21 HSPs)
chr1 (45-96)||(40650642-40650693)
chr1 (45-121)||(41584632-41584709)
chr1 (46-121)||(40907902-40907978)
chr1 (45-96)||(17000519-17000570)
chr1 (46-96)||(32817579-32817629)
chr1 (46-134)||(34162690-34162779)
chr1 (45-121)||(45046817-45046894)
chr1 (42-77)||(23442898-23442933)
chr1 (45-96)||(49677624-49677675)
chr1 (42-77)||(49786428-49786463)
chr1 (45-134)||(3561302-3561392)
chr1 (47-96)||(890655-890704)
chr1 (45-90)||(7011357-7011402)
chr1 (53-90)||(9446070-9446107)
chr1 (47-135)||(15069810-15069899)
chr1 (47-96)||(24472796-24472845)
chr1 (45-78)||(38885372-38885405)
chr1 (47-96)||(43318949-43318998)
chr1 (45-121)||(45567857-45567934)
chr1 (47-134)||(27794933-27795021)
chr1 (45-96)||(34006401-34006453)
[»] scaffold0027 (1 HSPs)
scaffold0027 (46-135)||(141931-142021)
[»] scaffold0182 (1 HSPs)
scaffold0182 (45-96)||(23243-23294)
[»] scaffold0508 (1 HSPs)
scaffold0508 (45-96)||(3362-3413)
[»] scaffold0010 (1 HSPs)
scaffold0010 (45-96)||(140626-140677)
[»] scaffold0016 (1 HSPs)
scaffold0016 (50-96)||(205778-205824)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 8621579 - 8621785
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaatttgggctgatac 117  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8621579 aacaatgacctaaaatgattatccataagagttagaaagattaatattatccttaaaatgattatccatgttacgaacaaattcaaatttgtgctgatac 8621678  T
Q  118 agttttggttatataatcataatcccaactgagtttggattatataatcttaattgttttttcccttgaaatagagtgtttagggtgatgttcggattct 217  Q
    ||||  |||||||||||| ||||||||||||||||  |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  8621679 agttcgggttatataatcctaatcccaactgagttcagattatataatcttaactgtttttccccttgaaatagggtgtttagggtgatgttcggattct 8621778  T
Q  218 ataatcc 224  Q
    |||||||    
T  8621779 ataatcc 8621785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 7982570 - 7982417
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaa-tttgggctgatacagttttggttatataatcataatccc 143  Q
    |||||| ||||||||||||||||||||||||||| ||   ||||||| ||||  |||||| |||| || |||||||||  | |||||||||| ||||       
T  7982570 agagttgggaagattaatattgtccttaaaatgactatttatgttacaaacatgttcaaaatttgtgccgatacagttcagattatataatcctaat--- 7982474  T
Q  144 aactgagtttggattatataatcttaattgttttttcccttgaaatagagtgtttagggtg 204  Q
       |||||| ||||||||||||| ||| |||||||| ||||||||||| || |||||||||    
T  7982473 ---tgagttcggattatataatcctaactgtttttt-ccttgaaatagggtatttagggtg 7982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 3094877 - 3094786
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  3094877 agagttaggaagattaatattgtccataaaatgattatccatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 3094786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 34853520 - 34853429
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||| | ||||||||||    
T  34853520 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatttttagaatttgtgctgatacagtttggattatataatc 34853429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 36317991 - 36317942
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  36317991 ataagagttagaaagattaatattgtccttaaaatgattatccatgttac 36317942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 8885420 - 8885511
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  8885420 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 8885511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 9845378 - 9845327
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  9845378 agagttaggaagattaatattgtccttaaaatgactatccatgttacaaaca 9845327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 33472263 - 33472212
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  33472263 agagttaggaagattaatattgtccttaaaatgactatccatgttacaaaca 33472212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 36980764 - 36980689
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgata 116  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||  |||| |||||| |||||||    
T  36980764 ataagagttagaaagatcaatattgtccttaaaatgattatccatgttacaaacatgttcataatttgtgctgata 36980689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 40392731 - 40392652
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagt 120  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| |||||||||||    
T  40392731 ataagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagt 40392652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 7965910 - 7965988
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||| |||||||||||||||| | | ||||||||||||| || ||||||||||||| ||| || ||||||||| ||||    
T  7965910 aacaaggacctaaaatgactattcgtgagagttaggaagactagtattgtccttaaagtgactatccatgttacaaaca 7965988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 40994983 - 40994893
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  40994983 gagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 40994893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 10833484 - 10833533
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  10833484 agttaggaagattaatattgtccttaaaatgactatccatgttacaaaca 10833533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 31234486 - 31234531
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||||||||||||||| || |||||||||    
T  31234486 gagttaggaagattaatattgtccttaaaatgactatccatgttac 31234531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 33472468 - 33472419
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  33472468 agttaggaagattaatattgtccttaaaatgactatccatgttacaaaca 33472419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 24627761 - 24627709
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca 102  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||| |||||    
T  24627761 taggaagattaatattgtccttaaaatgactatccatgttacaaacatattca 24627709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 9073692 - 9073605
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||| ||||||||  ||||||||||||    
T  9073692 ttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctaatacagttcgggttatataatc 9073605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 17119846 - 17119937
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||| |||| ||| | |||||| ||||||||| ||  | ||||||||||    
T  17119846 agagttaggaagattaatattgtccgtaaaatgacaatccatgttacaaacatatttagaatttgtgctgatacaattcagattatataatc 17119937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 27927908 - 27927999
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||  |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  27927908 agagttaggaagattaatattgtctctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 27927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 42280858 - 42280949
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  42280858 agagttaggaagattaatattgtccctaaaatgactatgcatgttacaaacatgtttaaaatttgtgctgatacagttcagattatataatc 42280949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 14164024 - 14164075
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||| ||||||||||||| |||||||| || ||||||||| ||||    
T  14164024 agagttaggaaaattaatattgtccctaaaatgactatccatgttacaaaca 14164075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 16310791 - 16310740
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||    
T  16310791 agagttaggaagattaatattgtccctaaaatgactattcatgttacaaaca 16310740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 28916967 - 28916876
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||| |||||||||||||||| |||||||| || |||||| || ||||  || | |||||| ||||||||||||  | ||||||||||    
T  28916967 agagttagaaagattaatattgtccctaaaatgactatccatgtaacaaacatgtttagaatttgtgctgatacagttcggattatataatc 28916876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 31234704 - 31234747
Alignment:
Q  53 gaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  31234704 gaagattaatattgtccttaaaatgacgatccatgttacgaaca 31234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 37248750 - 37248707
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgt 88  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  37248750 agagttaggaagattaatattgtccctaaaatgactatccatgt 37248707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 41530862 - 41530803
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaatttgg 109  Q
    |||||||||||||||||||||| |||||| || ||||||||| ||||  |||||| ||||    
T  41530862 taggaagattaatattgtccttgaaatgactatccatgttacaaacatgttcaaaattgg 41530803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 44106415 - 44106324
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |  ||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  44106415 agagttaggaagattaatattgtccatggaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 44106324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 10840724 - 10840770
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    |||||||||||||||||||||||||||| | || ||| |||||||||    
T  10840724 agagttaggaagattaatattgtccttacactggttatccatgttac 10840770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 4259604 - 4259653
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||| |||||||| || | ||||||| ||||    
T  4259604 agttaggaagattaatattgtccataaaatgactatcaatgttacaaaca 4259653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 11698283 - 11698328
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    ||||||||||||||||||||| ||| |||||||| || ||||||||    
T  11698283 agagttaggaagattaatattatccctaaaatgactatccatgtta 11698328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 47979946 - 47980063
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattc-aaatttgggctgata 116  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || | ||||||  || |  ||| ||||||| |||||||    
T  47979946 aacaatgacctaaaatgactatccatgagagttagaaagattaatattgtccttaaaatgactatctatgttataaatatgttcaaaatttgtgctgata 47980045  T
Q  117 cagttttggttatataat 134  Q
    |||||  | |||||||||    
T  47980046 cagttcggattatataat 47980063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 47123218 - 47123141
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||  || | |||||| ||||||||||||    
T  47123218 agagttaggaagattaatattgtccctaaaatgattatccatgttacaaacatgtttagaatttgtgctgatacagtt 47123141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 3352033 - 3352123
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  3352033 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcagattatataat 3352123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 38977715 - 38977805
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  38977715 agagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttataatttgtgctgatacagttcggattatataat 38977805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 45712053 - 45712142
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||| ||||   ||| |||||| ||||||||||||  | ||||||||||    
T  45712053 agttaggaagattaatatggtctttaaaatgattatccatgttacaaacatgatcataatttgtgctgatacagttcagattatataatc 45712142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 47130584 - 47130507
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||| ||||  || | |||||| ||||||||||||    
T  47130584 agagttaggaagattaatattgtccctaaaatgattgtccatgttacaaacatgtttagaatttgtgctgatacagtt 47130507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 3902773 - 3902864
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  3902773 agagttatgaagattaatattgtccataaaatgatcatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 3902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 29035991 - 29035940
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  29035991 agagttaggaagagtaatatggtccttaaaatgattatccatgttacaaaca 29035940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 33438713 - 33438622
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || |||| |||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  33438713 agagttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtttagaatttgtgctgatacagttcagattatataatc 33438622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 35142266 - 35142215
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||| ||||    
T  35142266 agagttaggaagattaatattgtctttaaaatgactatccatgttacaaaca 35142215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 43472933 - 43472968
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    ||||||||||||||||||||||||||||||||||||    
T  43472933 ataagagttaggaagattaatattgtccttaaaatg 43472968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 50716444 - 50716353
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  50716444 agagttaggaagattaatattgtccctaaaatgactattcatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 50716353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 50796403 - 50796494
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  50796403 agagttaggaagattaatattgtccctaaaatgactattcatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 50796494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 45244577 - 45244531
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||    
T  45244577 taggaagattaatattgtccttaaaatgactaaccatgttacaaaca 45244531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 8735583 - 8735534
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||| || | ||||||| ||||    
T  8735583 agttaggaagattaatattgtccttaaaatgactatcaatgttacaaaca 8735534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 9087824 - 9087775
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||| || | ||||||| ||||    
T  9087824 agttaggaagattaatattgtccttaaaatgactatcaatgttacaaaca 9087775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 29048455 - 29048388
Alignment:
Q  155 gattatataatcttaattgttttttcccttgaaatagagtgtttagggtgatgttcggattctataatcc 224  Q
    ||||||||||||| ||||| |||||||||||||| ||  ||||||||| | |||||||||||||||||||    
T  29048455 gattatataatctgaattg-tttttcccttgaaaaaggatgtttaggg-ggtgttcggattctataatcc 29048388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 30721774 - 30721810
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatga 78  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30721774 ataagagttaggaagattaatattgtccctaaaatga 30721810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 2358586 - 2358621
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  2358586 ataagagttaggaagattaatattgtccctaaaatg 2358621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 28873197 - 28873106
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||| ||||||||||||||||| |||||||| || | ||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  28873197 agagttaagaagattaatattgtccctaaaatgactatctatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 28873106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 34821314 - 34821401
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||| |||||||| || | ||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  34821314 ttaggaagattaatattgtccataaaatgactatctatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 34821401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 40062571 - 40062480
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattc-aaatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||||||| ||| ||||| |  ||| ||||||||| |||||| || ||||||| ||||||| ||||  | ||||||||||    
T  40062571 agagttaggaagattaatatggtctttaaactagttatccatgttacaaacaaactcaaaatttgtgctgatatagttcggattatataatc 40062480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 51540581 - 51540632
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||| ||||| ||||    
T  51540581 agagttaggaagattaatattgtccctaaaatgactatccaagttacaaaca 51540632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 8735373 - 8735333
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    |||||| |||||||||||||||||||||| || ||||||||    
T  8735373 taggaatattaatattgtccttaaaatgactatccatgtta 8735333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 9087614 - 9087574
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    |||||| |||||||||||||||||||||| || ||||||||    
T  9087614 taggaatattaatattgtccttaaaatgactatccatgtta 9087574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 46622762 - 46622806
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgtt 89  Q
    ||||| ||||||||||||||||||| |||||||| || |||||||    
T  46622762 agagtaaggaagattaatattgtccctaaaatgactatccatgtt 46622806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 47739899 - 47739991
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatca 136  Q
    ||||||| ||||||||||||||||| | |||||| || | ||||||| ||||  || | |||||| ||||||||||||  | |||||||||||    
T  47739899 agagttatgaagattaatattgtcccttaaatgactatctatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatca 47739991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 52777426 - 52777346
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||||| ||||||||||||||||| |||||||  ||  |||||||| ||||  || | |||||| ||||||||||||    
T  52777426 ataagagttaagaagattaatattgtccctaaaatggctatacatgttacaaacatgtttagaatttgtgctgatacagtt 52777346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 59912 - 60014
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattc-aaatttgggctgata 116  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| || | ||||||| ||||  ||| ||||||| |||| ||    
T  59912 aacaatgacctaaaatgactatccat--gagttaggaagattaatattgtctttaaaatgactatctatgttacaaacatgttcaaaatttgtgctggta 60009  T
Q  117 cagtt 121  Q
    |||||    
T  60010 cagtt 60014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 59577 - 59509
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgt 88  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||| || ||||||    
T  59577 aacaatgacctaaaatgactatccat--gagttagaaagattaatattgtccttaaaatgactatccatgt 59509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 48775827 - 48775754
Alignment:
Q  18 aacaatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||  ||||||||    
T  48775827 aacaatgacctaaaatgactatccatgatagttaggaagattaatattgtccttaaactgactattcatgttac 48775754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 48776153 - 48776223
Alignment:
Q  20 caatgacctaaaatgactatccataagagttaggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| | || ||||||||    
T  48776153 caatgacctaaaatgactatgcatgagagttaggaagattaatattatccttaaaatcactatccatgtta 48776223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 36946259 - 36946349
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||| ||||||||||| ||||||||||||  |||||||| |||| ||||| |||||| ||||||||||||  ||||||||||||    
T  36946259 agagttaggaagcttaatattgtc-ttaaaatgattattcatgttacaaacatattcagaatttgtgctgatacagttcgggttatataatc 36946349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 42865069 - 42865160
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||| | |||||| ||||||||||||  | ||||||||||    
T  42865069 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatatttagaatttgtgctgatacagttcggattatataatc 42865160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 3936300 - 3936249
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  3936300 agagttaggaagattaatattgtccctaaaatgattatccatgttacaaaca 3936249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 9151988 - 9151897
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  9151988 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 9151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 28230435 - 28230526
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  28230435 agagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 28230526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 5278459 - 5278405
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||||| ||||    
T  5278459 ataagagttaggaagattaatattatccttaaaatgactatccatgttacaaaca 5278405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 42925608 - 42925685
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||    
T  42925608 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagtt 42925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 1518899 - 1518808
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  1518899 agagttaagaagattaatattgtccataaaatgattatcgatgttacaaacatgtttataatttgtgctgatacagttcggattatataatc 1518808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 3304722 - 3304771
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    |||||||||||||||||||||||||||| ||||||| |||  ||||||||    
T  3304722 ataagagttaggaagattaatattgtccctaaaatggttatacatgttac 3304771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 8214468 - 8214501
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||||||||||||    
T  8214468 agagttaggaagattaatattgtccttaaaatga 8214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 8214257 - 8214301
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgtt 89  Q
    |||||||||||||||||||||||||||| ||||| || |||||||    
T  8214257 agagttaggaagattaatattgtccttagaatgactatccatgtt 8214301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 24042155 - 24042246
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||| ||||||||| |||||||| || | ||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  24042155 agagttaggaagattgatattgtccctaaaatgactatcaatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 24042246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 19818572 - 19818526
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||||||| |||||| | || |||||||||    
T  19818572 agagttaggaagattaatattgtccctaaaataactatccatgttac 19818526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 31643236 - 31643202
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaat 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  31643236 ataagagttaggaagattaatattgtccctaaaat 31643202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 36408563 - 36408473
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||| ||||||||||||||||| |||||| | || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  36408563 agagttaagaagattaatattgtccctaaaattactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataat 36408473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 36468504 - 36468594
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||| ||||||||||||||| | |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  36468504 agagttatgaagattaatattgttcctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataat 36468594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 43737274 - 43737241
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||| ||||||||    
T  43737274 agagttaggaagattaatattgtccctaaaatga 43737241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 47202689 - 47202656
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaa 75  Q
    |||||||||||||||||||||||||||| |||||    
T  47202689 ataagagttaggaagattaatattgtccctaaaa 47202656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 16278287 - 16278247
Alignment:
Q  56 gattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||| || ||||||||| ||||    
T  16278287 gattaatattgtccttaaaatgactatccatgttacaaaca 16278247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 8739155 - 8739206
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  8739155 agagttaggaagattaatattgtccttaaaatgactacccatgttacaaaca 8739206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 31221306 - 31221397
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||| | ||||||||||    
T  31221306 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttataatttgtgctgatacagtttggattatataatc 31221397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 8973576 - 8973640
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaatttgg 109  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||| ||||  |||||| ||||    
T  8973576 agagttaggaaggttaatattgtccttaaaatgattatccatgttacaaacatgttcaaaattgg 8973640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 33487764 - 33487673
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  33487764 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatttttagaatttgtgctgatacagttcggattatataatc 33487673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 37183748 - 37183839
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||| | |||||| | ||||||||||  | ||||||||||    
T  37183748 agagttaggaagattaatattgtccataaaatgactatccatgttacaaacatatttagaatttgtgttgatacagttcagattatataatc 37183839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 38692750 - 38692841
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  38692750 agagttatgaatattaatattgtccttaaaatgattatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 38692841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 12847597 - 12847520
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||| |||||||||||||||||| ||||||||||| | ||||||| ||||  |||| |||||| ||||||||||||    
T  12847597 agagttgggaagattaatattgtccataaaatgattatctatgttacaaacatgttcagaatttgtgctgatacagtt 12847520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 34530367 - 34530318
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  34530367 agttaggaagattaatattgtccttaaaatgactaaccatgttacaaaca 34530318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 14112019 - 14111947
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgataca 118  Q
    ||||||||||||||||||||||| |||||||| || ||||||||| |||| | || ||||||| |||||||||    
T  14112019 agttaggaagattaatattgtccctaaaatgactatccatgttacaaacatatttaaaatttgtgctgataca 14111947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 29862764 - 29862676
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  29862764 agttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataat 29862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 6156885 - 6156834
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  6156885 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 6156834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 8738952 - 8739003
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||| ||||    
T  8738952 agagttaggaagattaatattgttcttaaaatgactatccatgttacaaaca 8739003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 20891767 - 20891676
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||| ||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  20891767 agagttaggaagattaatattatccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 20891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 23269491 - 23269456
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgatt 80  Q
    ||||||||||||||||||||||||||||||||||||    
T  23269491 agagttaggaagattaatattgtccttaaaatgatt 23269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 27158234 - 27158147
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||| ||||||||||||||||||||| || ||||||| | ||||  |||| |||||| ||||||||||||  | ||||||||||    
T  27158234 ttaggaagcttaatattgtccttaaaatgactatccatgtttcaaacatgttcataatttgtgctgatacagttcagattatataatc 27158147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 27494123 - 27494166
Alignment:
Q  48 gttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  27494123 gttaggaagattaatattgtccttaaaatgactatccatgttac 27494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 31929092 - 31929182
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  31929092 agagttaggaagattaatattgtcc-taaaatgactatccatgttacaaacatgtttaaaatttgtgctgatacagttcagattatataatc 31929182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 38871825 - 38871734
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||| |||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  38871825 agagttaggaagattattattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 38871734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 40619957 - 40620003
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||    
T  40619957 agagttaggaagattaatattgtccctaaaatgattgtccatgttac 40620003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 40613644 - 40613693
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  40613644 agttaggaagattaataatgtccttaaaataattatccatgttacaaaca 40613693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 24203651 - 24203687
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgatta 81  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24203651 agagttaggaacattaatattgtccttaaaatgatta 24203687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 15799375 - 15799288
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||| ||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  15799375 ttaggaagaataatattgtccataaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 15799288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 38372463 - 38372420
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgt 88  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  38372463 agagttaggaagattaatattgtccctaaaatgactatccatgt 38372420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 16429439 - 16429385
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||| |||||||||||||||||||||||| || ||  |||||||| ||||    
T  16429439 ataagagtttggaagattaatattgtccttaaaacgactattcatgttacaaaca 16429385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 28445176 - 28445206
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaa 75  Q
    |||||||||||||||||||||||||||||||    
T  28445176 agagttaggaagattaatattgtccttaaaa 28445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 28445381 - 28445423
Alignment:
Q  54 aagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| || ||||||||| ||||    
T  28445381 aagattaatattgtccttaaaatgactatccatgttacaaaca 28445423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 38641083 - 38641037
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||||||| || | ||||||| ||||    
T  38641083 taggaagattaatattgtccttaaaatgactatctatgttacaaaca 38641037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 4064689 - 4064738
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||| ||||||| |||||||| || ||||||||| ||||    
T  4064689 agttaggaagattaacattgtccctaaaatgactatccatgttacaaaca 4064738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 7884347 - 7884314
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||| ||||||||    
T  7884347 agagttaggaagattaatattgtccctaaaatga 7884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 28083347 - 28083436
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||| |||||||||||||||| |||||||| || ||||||||| || |  || | |||||| ||||||||||||  | ||||||||||    
T  28083347 agttagaaagattaatattgtccctaaaatgactatccatgttacaaatatgtttataatttgtgctgatacagttcggattatataatc 28083436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 21070517 - 21070429
Alignment:
Q  48 gttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||| |||||||||||||||||||||||||| || | ||||||| || |  |||| ||||||  ||||| |||||| | ||||||||||    
T  21070517 gttatgaagattaatattgtccttaaaatgactatctatgttacaaatatgttcagaatttgtactgattcagtttggattatataatc 21070429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 27493919 - 27493967
Alignment:
Q  48 gttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||  ||||||||| || ||||||||| ||||    
T  27493919 gttaggaagattaatattgtttttaaaatgactatccatgttacaaaca 27493967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 32841937 - 32841989
Alignment:
Q  45 agagttaggaagattaatattg-tccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||| ||| |||||||| || ||||||||| ||||    
T  32841937 agagttaggaagattaatattgttccctaaaatgactatccatgttacaaaca 32841989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 32187831 - 32187922
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| |||| | || ||||||| ||||||||||||  | ||||||||||    
T  32187831 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatatttaaaatttgtgctgatacagttcggattatataatc 32187922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 34519501 - 34519550
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  34519501 agttaggaagattaatattgtccttaaaatgattatccatgttacaaaca 34519550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 33452405 - 33452456
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  33452405 agagttaggaagattaatattgtccctaaaatgattatccatgttacaaaca 33452456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 39447354 - 39447263
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||| ||||  || | |||||| |||||||||||||   ||||||||||    
T  39447354 agagttaggaagattaatattgtctttaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagtttgaattatataatc 39447263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 41203150 - 41203239
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||| |||||||| || ||||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  41203150 agttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttaaaatttgtgctgatacagttcggtttatataatc 41203239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 42894569 - 42894524
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  42894569 agagttaggaagattaatattgtccctaaaatgattatccatgtta 42894524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 17766791 - 17766855
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaatttgg 109  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| ||||  |||||| ||||    
T  17766791 agagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcaaaattgg 17766855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 17474761 - 17474852
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||  |||||||| || ||||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  17474761 agagttaggaagattaatattgtctctaaaatgactatccatgttacaaacatgtttaaaatttgtgctgatacagttcggattatataatc 17474852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 19109977 - 19110068
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||| ||||||||||||  | ||||||||| || | | || ||||||| ||||||| ||||| | ||||||||||    
T  19109977 agagttaggaagattaatattatccttaaaatgacgatccatgttacaaagatatttaaaatttgtgctgatatagtttggattatataatc 19110068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 44465689 - 44465740
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  44465689 agagttaggaagattaatattgtccctaaaatgactaaccatgttacaaaca 44465740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 15995075 - 15995126
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||| |||||||||||||||| |||||||| || ||||||||| ||||    
T  15995075 agagttagaaagattaatattgtccataaaatgactatccatgttacaaaca 15995126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 34817291 - 34817216
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||||||||||||| ||||||| | || ||| ||||||||| ||||| |||| |||| | ||||||||||||    
T  34817291 agttaggaagattaatatggtccttacattggttatccatgttacaaacaagttcagaattggtgctgatacagtt 34817216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 45153753 - 45153804
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||| ||||||||||||||||| |||||||| || ||||||||| ||||    
T  45153753 agagttaagaagattaatattgtccctaaaatgactatccatgttacaaaca 45153804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 27900576 - 27900666
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||| ||| |||||||| ||||||||| || ||| ||||||||  |||||| ||| |||||| ||||||||||||  | |||||||||    
T  27900576 agagttaagaaaattaatatggtccttaaactggttatccatgttataaacaaactcataatttgtgctgatacagttcagattatataat 27900666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 36875177 - 36875131
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||| ||| |||||||| || |||||||||    
T  36875177 agagttaggaagattaatattatccctaaaatgactatccatgttac 36875131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 36948904 - 36948938
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaat 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  36948904 ataagagttaggaagattaatattgtccctaaaat 36948938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 9847176 - 9847225
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||| |||||||||||||||||||||||||| || | ||||||| ||||    
T  9847176 agttatgaagattaatattgtccttaaaatgactatcaatgttacaaaca 9847225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 9847386 - 9847415
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||||||||    
T  9847386 ttaggaagattaatattgtccttaaaatga 9847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 30763841 - 30763808
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||| ||||||||    
T  30763841 agagttaggaagattaatattgtccataaaatga 30763808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 35251121 - 35251032
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    |||||| |||||||||||| ||||||||| ||  || |||| |||| |||||| ||| |||||| ||| ||||||||| | |||||||||    
T  35251121 gagttaagaagattaatatggtccttaaactggctatccatattacaaacaaactcagaatttgtgctaatacagtttggattatataat 35251032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 41510391 - 41510424
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||||||||||||||||| ||||||||    
T  41510391 agagttaggaagattaatattgtccctaaaatga 41510424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 14587527 - 14587618
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| || ||||||||| || ||||||||||    
T  14587527 agagttaggaagattaatattgtccgtaaaatgactatccatgttacaaacatgtttagaatttgtgccgatacagttatgattatataatc 14587618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 23406988 - 23406898
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  23406988 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataat 23406898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 236986 - 236909
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||| ||||  |||| |||||| ||||||| ||||    
T  236986 agagttaggaagattaatatggtccttaaaatgattttccatgttacaaacatgttcataatttgtgctgatatagtt 236909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 2539643 - 2539592
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  2539643 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 2539592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 5699757 - 5699706
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||| ||||    
T  5699757 agagttatgaagattaatattgtccttaaaatgactatccatgttacaaaca 5699706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 21514998 - 21515049
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  21514998 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 21515049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 4508271 - 4508360
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||| |||||||| || |||| |||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  4508271 agttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtttagaatttgtgctgatacagttcagattatataatc 4508360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 34528632 - 34528555
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||| |||||||||||| ||||| |||||| || ||||||||| ||||  |||| |||||| ||||||||||||    
T  34528632 agagttagaaagattaatattatccttgaaatgaatatccatgttacaaacatgttcataatttgtgctgatacagtt 34528555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 32044577 - 32044541
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatga 78  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32044577 ataagagttaggaagattaatattgtccctaaaatga 32044541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 1945497 - 1945548
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||| ||| |||||||| || ||||||||| ||||    
T  1945497 agagttaggaagattaatattatccctaaaatgactatccatgttacaaaca 1945548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 17264602 - 17264511
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||| |||||||||| |||||||| || ||||||| | ||||  || | |||||| ||||||||||||  | ||||||||||    
T  17264602 agagttaggaagataaatattgtccctaaaatgactaaccatgttgcaaacatgtttagaatttgtgctgatacagttcagattatataatc 17264511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 6704093 - 6704139
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    |||||||||||||||||||||||||||||| |  ||| |||||||||    
T  6704093 agagttaggaagattaatattgtccttaaactagttatccatgttac 6704139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 17501054 - 17500994
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattcaaatttgg 109  Q
    ||||||||||||||| |||||||||||||| ||  |||||||| ||||  |||| ||||||    
T  17501054 ttaggaagattaataatgtccttaaaatgactattcatgttacaaacatgttcagatttgg 17500994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 17501268 - 17501240
Alignment:
Q  50 taggaagattaatattgtccttaaaatga 78  Q
    |||||||||||||||||||||||||||||    
T  17501268 taggaagattaatattgtccttaaaatga 17501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 40703864 - 40703773
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  40703864 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 40703773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 41323059 - 41323110
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  41323059 agagttaggaagattaatattgtccataaaatgattatccatgttacaaaca 41323110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 2506002 - 2506089
Alignment:
Q  49 ttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||| |||||||| || ||||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  2506002 ttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttaaaatttgtgctgatacagttcggattatataatc 2506089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 17933104 - 17933155
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||    
T  17933104 agagttaggaagattaataatgtccctaaaatgattatccatgttacaaaca 17933155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 19835720 - 19835629
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||| | |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  19835720 agagttaggaagattaatattgttcctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 19835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 25140473 - 25140524
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||| ||||    
T  25140473 agagttaggaagattaatattgttcttaaaatgattatacatgttacaaaca 25140524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 25491362 - 25491453
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  25491362 agagttaggaagattaatattgtccataaaatgactattcatgttacaaacatgtttagaatttgtgctgatacagttcagattatataatc 25491453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 48319031 - 48319122
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    ||||||||||||||||||||||||| |||||||| || | ||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  48319031 agagttaggaagattaatattgtccctaaaatgactatcaatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 48319122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 53893992 - 53894083
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||| |||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  53893992 agagttagaaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 53894083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 7863644 - 7863590
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||| ||||||||| ||||||||||||||||||||||||  ||||||||| ||||    
T  7863644 ataaaagttaggaatattaatattgtccttaaaatgattgtccatgttacaaaca 7863590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 25140894 - 25140940
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||    
T  25140894 taggaagattaatattgtccttaaaatgactatccatgttacaaaca 25140940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 32442013 - 32441964
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||    
T  32442013 ataagagttaggaagattaatattgtctttaaaatggttatacatgttac 32441964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 18487711 - 18487777
Alignment:
Q  155 gattatataatcttaattgttttttcccttgaaatagagtgtttagggtgatgttcggattctataatc 223  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||||| | | ||||||||||||||||||    
T  18487711 gattatataatctgaattgttttttacc-tgaaaaagagtgtttagcgag-tgttcggattctataatc 18487777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 6228777 - 6228812
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  6228777 ataagagttaggaagattaatattgtccctaaaatg 6228812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 7931857 - 7931806
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||| | || ||||||||| ||||    
T  7931857 agagttaggaagattaatattgtccctaaaataactatccatgttacaaaca 7931806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 25752411 - 25752462
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||| |||||||||| |||||||||||||||||| || ||||||||| ||||    
T  25752411 agagctaggaagattgatattgtccttaaaatgactatccatgttacaaaca 25752462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 34973067 - 34973032
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  34973067 ataagagttaggaagattaatattgtccctaaaatg 34973032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 38536370 - 38536319
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||    
T  38536370 agagttaggaagattaatattgtccataaaatgactattcatgttacaaaca 38536319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 49397215 - 49397180
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  49397215 ataagagttaggaagattaatattgtccctaaaatg 49397180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 25140687 - 25140733
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||| ||||||| || ||||||||| ||||    
T  25140687 taggaagattaatattgtcctcaaaatgactatccatgttacaaaca 25140733  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 41413062 - 41413111
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatgattacccatgttac 91  Q
    |||||||||||||||||||||||||| | |||||||| ||  ||||||||    
T  41413062 ataagagttaggaagattaatattgttcctaaaatgactatacatgttac 41413111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 55052588 - 55052637
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||| ||||||| |||||||| || ||||||||| ||||    
T  55052588 agttaggaagattaacattgtccctaaaatgactatccatgttacaaaca 55052637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 6003637 - 6003673
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatga 78  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  6003637 ataagagttaggaagattaatattatccctaaaatga 6003673  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 42660347 - 42660375
Alignment:
Q  50 taggaagattaatattgtccttaaaatga 78  Q
    |||||||||||||||||||||||||||||    
T  42660347 taggaagattaatattgtccttaaaatga 42660375  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 47784188 - 47784137
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaa 97  Q
    |||||||||| ||||||||||||||||||||||| || |||| |||| |||||    
T  47784188 agagttagga-gattaatattgtccttaaaatgactatccatattacaaacaa 47784137  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 40650642 - 40650693
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  40650642 agagttaggaagattaatattgtccctaaaatgattatccatgttacaaaca 40650693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 41584632 - 41584709
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||    
T  41584632 agagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagtt 41584709  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 40907902 - 40907978
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||| ||||  || | |||||| ||||||||||||    
T  40907902 gagttaggaagattaatattgtctctaaaatgattatccatgttacaaacatgtttagaatttgtgctgatacagtt 40907978  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 17000570 - 17000519
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  17000570 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 17000519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 32817579 - 32817629
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  32817579 gagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 32817629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 34162690 - 34162779
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    |||||||||||||||||||||||| |||||||  || ||||||||| ||||  || | |||||| ||||||||||||  | |||||||||    
T  34162690 gagttaggaagattaatattgtccctaaaatggctatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataat 34162779  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 45046817 - 45046894
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    ||||||||||||||||||||||||| | |||||| || ||||||||| ||||  || | |||||| ||||||||||||    
T  45046817 agagttaggaagattaatattgtccctgaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagtt 45046894  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 23442933 - 23442898
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  23442933 ataagagttaggaagattaatattgtccctaaaatg 23442898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 49677675 - 49677624
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || | ||||||| ||||    
T  49677675 agagttaggaagattaatattgtccctaaaatgactatctatgttacaaaca 49677624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 49786463 - 49786428
Alignment:
Q  42 ataagagttaggaagattaatattgtccttaaaatg 77  Q
    |||||||||||||||||||||||||||| |||||||    
T  49786463 ataagagttaggaagattaatattgtccataaaatg 49786428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 3561302 - 3561392
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataat 134  Q
    |||||||| |||||||||| |||||||||||| | || | ||||||| ||||  |||| |||||| ||||||||||||  | |||||||||    
T  3561302 agagttagaaagattaatactgtccttaaaattactatctatgttacaaacatgttcataatttgtgctgatacagttcggattatataat 3561392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 890704 - 890655
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||| |||||||||||||||||||||| || ||| ||||||||| ||||    
T  890704 agttatgaagattaatattgtccttaaactggttatccatgttacaaaca 890655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 7011402 - 7011357
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgtta 90  Q
    ||||||| ||||||||||||||||| |||||||| || ||||||||    
T  7011402 agagttaagaagattaatattgtccctaaaatgactatccatgtta 7011357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 9446070 - 9446107
Alignment:
Q  53 gaagattaatattgtccttaaaatgattacccatgtta 90  Q
    |||||||||||||||||||||||||| || ||||||||    
T  9446070 gaagattaatattgtccttaaaatgactatccatgtta 9446107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 15069810 - 15069899
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataatc 135  Q
    |||||| |||||||||||||||  |||||||| || ||||||||| ||||   || ||||||| ||||||||||||  | ||||||||||    
T  15069810 agttagtaagattaatattgtctctaaaatgactatccatgttacaaacatgtttaaaatttgtgctgatacagttcggattatataatc 15069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 24472796 - 24472845
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||| |||||||| |||||||||||| || ||||||||| ||||    
T  24472796 agttaggaagcttaatattttccttaaaatgactatccatgttacaaaca 24472845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 38885405 - 38885372
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatga 78  Q
    ||||||||||| ||||||||||||||||||||||    
T  38885405 agagttaggaaaattaatattgtccttaaaatga 38885372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 43318949 - 43318998
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||| |||||||||| || | ||||||| ||||    
T  43318949 agttaggaagattaatattgttcttaaaatgactatcaatgttacaaaca 43318998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 45567857 - 45567934
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagtt 121  Q
    |||||||| |||||||||||||||| |||||||| || |||| |||| ||||  || | |||||| ||||||||||||    
T  45567857 agagttagaaagattaatattgtccctaaaatgactatccatattacaaacatgtttagaatttgtgctgatacagtt 45567934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 27795021 - 27794933
Alignment:
Q  47 agttaggaagattaatattgtccttaaaatgattacccatgttacgaaca-aattcaaatttgggctgatacagttttggttatataat 134  Q
    ||||||||||||||||||||||| |||||||| || | ||||||  ||||   || ||||||| ||||||||||||  | |||||||||    
T  27795021 agttaggaagattaatattgtccataaaatgactatctatgttataaacatgtttaaaatttgcgctgatacagttcagattatataat 27794933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 34006453 - 34006401
Alignment:
Q  45 agagttaggaagattaatattg-tccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||||||||| ||| |||||||| || ||||||||| ||||    
T  34006453 agagttaggaagattaatattgttccctaaaatgactatccatgttacaaaca 34006401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 141931 - 142021
Alignment:
Q  46 gagttaggaagattaatattgtccttaaaatgattacccatgttacgaacaaattca-aatttgggctgatacagttttggttatataatc 135  Q
    |||||||||||||||||||||||| |||||||| || ||||||||| ||||  || | |||||| ||||||||||||  | ||||||||||    
T  141931 gagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatttgtgctgatacagttcggattatataatc 142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 23294 - 23243
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  23294 agagttaggaagattaatattgtccctaaaatgactatccatgttacaaaca 23243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 3362 - 3413
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||    
T  3362 agagttacgaagattaatattgtccctaaaatgattatcgatgttacaaaca 3413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 140677 - 140626
Alignment:
Q  45 agagttaggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    ||||||||||||||||||||||||| |||||||| || | ||||||| ||||    
T  140677 agagttaggaagattaatattgtccctaaaatgactatcaatgttacaaaca 140626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 205778 - 205824
Alignment:
Q  50 taggaagattaatattgtccttaaaatgattacccatgttacgaaca 96  Q
    |||||||||||||||| |||||||||||| |||| ||||||| ||||    
T  205778 taggaagattaatattatccttaaaatgactaccaatgttacaaaca 205824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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