View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_high_6 (Length: 843)

Name: NF5654_2D_high_6
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_high_6
NF5654_2D_high_6
[»] chr2 (2 HSPs)
chr2 (325-824)||(45365871-45366372)
chr2 (18-262)||(45365563-45365808)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 325 - 824
Target Start/End: Original strand, 45365871 - 45366372
Alignment:
Q  325 gtaatagaaacatgcctcaggacaacagggtcccaaaagcattcgttaatcagacaccgattcatcttcatcctatgcannnnnnn-aatcgccacaacc 423  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||        |||||||||||||    
T  45365871 gtaatagaaacatgcctcaggacaccagggtcccaaaagcattcgttaatcagacactgattcatcttcgtcctatgcaccccccccaatcgccacaacc 45365970  T
Q  424 aaactttaatttcgtcaaccaccgccataggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat 523  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45365971 aaactttaatttcgtcaaccaccgccaaaggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat 45366070  T
Q  524 ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366071 ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca 45366170  T
Q  624 ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaacc-----gtcctgtcacacaaaacacaatcaaccgacatacc 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  45366171 ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaaccgtcctgtcctgtcacacaaaacacaatcaaccgacatacc 45366270  T
Q  719 caatggaaggaatgactccaccataccctaagttgaattttgtcggaattctgttatgaagcaatttccataaaaagaccactgccttggaagctgttgg 818  Q
    ||||    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45366271 caat----ggaatgactccacgataccctaagttgaattttgtcggaattctattatgaagcaatttccataaaaagaccactgccttggaagctgttgg 45366366  T
Q  819 gctttt 824  Q
    ||||||    
T  45366367 gctttt 45366372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 45365563 - 45365808
Alignment:
Q  18 aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45365563 aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc 45365662  T
Q  118 tcaatacaacctgaaccc-aaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45365663 tcaatacaacctgaaccccaaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc 45365762  T
Q  217 gaaaccaaataaaagacctccacaaaacctactggcactgaggctt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45365763 gaaaccaaataaaagacctccacaaaacctactggcactgaggctt 45365808  T

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