View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_62 (Length: 233)
Name: NF5654_2D_high_62
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 56069291 - 56069516
Alignment:
| Q |
9 |
gactgatatgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaa-------------ttgacctttattatggatggatgttgc |
95 |
Q |
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| T |
56069291 |
gactgatacgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaacctataaggtgcattgacctttattatggatggatgttgc |
56069390 |
T |
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| Q |
96 |
attctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttcatatttccat---- |
191 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
56069391 |
attctcgcaaatacacagaatcataatgaatgtacttcgtccaataaccttgaaacttttgaatacttatctcgagccatggtttcatatttccattata |
56069490 |
T |
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| Q |
192 |
tatagtgtgtattacagcagcacttt |
217 |
Q |
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|||||||||||||||||||||||||| |
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| T |
56069491 |
tatagtgtgtattacagcagcacttt |
56069516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 38398961 - 38398840
Alignment:
| Q |
77 |
tattatggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatg |
176 |
Q |
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| T |
38398961 |
tattattgattgatattgcattctcgcaaatactcactctcataatcaacatacttcgtccaataacctttaaacttcggtatacttatctccagccacg |
38398862 |
T |
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| Q |
177 |
gtttcatatttccattatagtg |
198 |
Q |
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| T |
38398861 |
gtttcaagtttccgttatagtg |
38398840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 10171266 - 10171151
Alignment:
| Q |
83 |
ggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttca |
182 |
Q |
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|||| ||||||||||||||||||||| ||| || ||| | || ||||| ||||| |||||| |||||| ||||||||||||| | |||||| |||| |
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| T |
10171266 |
ggattgatgttgcattctcgcaaatagacatgattatagttgacatactttgtccagtaacctctaaacttgggaatacttatctccaaccatggcttca |
10171167 |
T |
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| Q |
183 |
tatttccattatagtg |
198 |
Q |
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| T |
10171166 |
tgttcccattgtagtg |
10171151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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