View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_9 (Length: 648)
Name: NF5654_2D_high_9
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 212 - 446
Target Start/End: Original strand, 2579942 - 2580175
Alignment:
| Q |
212 |
aactcatggaatcaaaagatattcttttctacctagaaattttccatacatgacaatgagtataactccaccttttgatcaaatagcaacaagtttccct |
311 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2579942 |
aactcatggaatcaaaatatattattttctacctagaaattttccatacatgacaatgagtataactccaccttttgatcaaatagcaacaagtttccct |
2580041 |
T |
|
| Q |
312 |
actaaaactccaacaacaaaacaacatgcaagagttagcgaaacaggtgaaggtttgtaatctcacaattgaaacactaaagttctgattcctaaaacaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2580042 |
actaaaactccaacaacaaaacaacatgcaagagttagcgaaacaggtgaaggtttgtaatctcacaattgaaacactaaagttctgattcct-aaacaa |
2580140 |
T |
|
| Q |
412 |
tgtaaaataattaaccaagtaggtacttactcaac |
446 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2580141 |
tgtaaaataattaaccaagtaggtacttactcaac |
2580175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2579689 - 2579900
Alignment:
| Q |
1 |
tgtgaatattattatagtccccaccaatgaaagtcttactaaaaataatgagaataaaattactcccgattttgaagttgacggtgaattactttcatat |
100 |
Q |
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||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2579689 |
tgtgaatattattttggtccccaccaatgaaagtcttactcaaaataatgagaataaaattactcccgattttgaagttgacggtgaattactttcatat |
2579788 |
T |
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| Q |
101 |
tagtcatatattgagatgtcacctttactagttcttataaagttgtgcctattgtgcttaaacttgttaatacgtcaacattgataccagttagtcaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2579789 |
tagtcatatattgagatgtcacctttactagttcttataaagttgtgcctattgtgcttaaacttgttaatacgtcaacattgataccaattagtcaaac |
2579888 |
T |
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| Q |
201 |
catttctcttga |
212 |
Q |
| |
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|||||||||||| |
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| T |
2579889 |
catttctcttga |
2579900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 457 - 632
Target Start/End: Original strand, 2581041 - 2581216
Alignment:
| Q |
457 |
tgagactttgaacattctcaagaggcaccctaatgttgtttttggggatgacaaataggattatcagtatcctctacaggatgggtgggtttgtgcctgc |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2581041 |
tgagactttgaacattctcaagaggcaccctaatgttgtttttgcggatgacaaataggattatcagtatcctctacaggatgggtgggtttgtgcctgc |
2581140 |
T |
|
| Q |
557 |
cctctgctaagaccaaaagatttgattcattttttgcaagatttgtcgatgaattcaacggatgataattcaaagt |
632 |
Q |
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| T |
2581141 |
cctctgctaagaccaaaagatttgattcattttttggaagatttgccgatgaattcaacggatgataattcaaagt |
2581216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 10294308 - 10294371
Alignment:
| Q |
457 |
tgagactttgaacattctcaagaggcaccctaatgttgtttttggggatgacaaataggattat |
520 |
Q |
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|
| T |
10294308 |
tgagactttgaacattctcaagaggcaccctaatgttgtttttagggatgacaaataggattat |
10294371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 585 - 623
Target Start/End: Original strand, 10294370 - 10294408
Alignment:
| Q |
585 |
attttttgcaagatttgtcgatgaattcaacggatgata |
623 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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|
| T |
10294370 |
attttttggaagatttgtcgatgaattcaacggatgata |
10294408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 503
Target Start/End: Original strand, 55287627 - 55287665
Alignment:
| Q |
465 |
tgaacattctcaagaggcaccctaatgttgtttttgggg |
503 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
55287627 |
tgaacattctcaaaaggcaccctaatgttgtttttgggg |
55287665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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