View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_10 (Length: 848)
Name: NF5654_2D_low_10
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 779; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 13 - 828
Target Start/End: Complemental strand, 43617043 - 43616228
Alignment:
| Q |
13 |
gtttggtgttagcttagttgtgagaatttgacattgtaacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaatta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617043 |
gtttggtgttagcttagttgtgagaatttgacattgtaacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaatta |
43616944 |
T |
|
| Q |
113 |
ataattatttttctgttcactaaattttgttnnnnnnnttatcgataacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttata |
212 |
Q |
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| T |
43616943 |
ataattatttttctgttcactaaattttgttaaaaaaattatccatgacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttata |
43616844 |
T |
|
| Q |
213 |
ccgcaaattgaaattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccatttttt |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43616843 |
ccacaaattgaaattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccatttttt |
43616744 |
T |
|
| Q |
313 |
gtcatatgattcatgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattggggtcccttgtaaaatgccaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43616743 |
gtcatatgattcatgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattggggtcccttgtaaaatgccaga |
43616644 |
T |
|
| Q |
413 |
atcgctacaccggccatgcacaataatacacttcctatctttgaaattccagattttgtccttaaatttaccttctccactctgcaatataccatgagca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43616643 |
atcgctacaccggccatgcacaataatacacttcctatctttgaaattccagattttgtccttaaatttaccttctccactctgcaatataccatgagca |
43616544 |
T |
|
| Q |
513 |
actctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacattctctttacgaataaaatt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43616543 |
actctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacattctctttacgaataaaatt |
43616444 |
T |
|
| Q |
613 |
tttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaaga |
712 |
Q |
| |
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| T |
43616443 |
tttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaaga |
43616344 |
T |
|
| Q |
713 |
cagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
812 |
Q |
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| T |
43616343 |
cagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
43616244 |
T |
|
| Q |
813 |
cattgacccgattaat |
828 |
Q |
| |
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||| |||||||||||| |
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| T |
43616243 |
catagacccgattaat |
43616228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 224 - 503
Target Start/End: Complemental strand, 43610206 - 43609928
Alignment:
| Q |
224 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
323 |
Q |
| |
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|||||||||| || |||||||||||||| |||||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43610206 |
aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgatt |
43610108 |
T |
|
| Q |
324 |
catgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattggggtcccttgtaaaatgccagaatcgctacacc |
423 |
Q |
| |
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|| || |||||||| ||||| ||||||||||||||||||| | || ||||| || || || |||||||||||||||||||| ||||||||||||||||| |
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| T |
43610107 |
cactatcttcatgttgttgatagttgtgatgatatccagatgggaggtgacgtgcaattcgcaattggggtcccttgtaaaaggccagaatcgctacacc |
43610008 |
T |
|
| Q |
424 |
ggccatgcacaataatacacttcctatctttgaaattccagattttgtccttaaatttaccttctccactctgcaatata |
503 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
43610007 |
ggccatgcacaataaaacactccctatctttgaaattccagattttgtccttatatttaccttctccactctacaatata |
43609928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 224 - 491
Target Start/End: Complemental strand, 43603798 - 43603531
Alignment:
| Q |
224 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
323 |
Q |
| |
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|||||||| || |||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||| |
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| T |
43603798 |
aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgatt |
43603699 |
T |
|
| Q |
324 |
catgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattggggtcccttgtaaaatgccagaatcgctacacc |
423 |
Q |
| |
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|| || || ||||| ||||| ||||||||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
43603698 |
cactatctttatgttgttgatagttgtgatgatatccagataggagatgccgcgcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacacc |
43603599 |
T |
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| Q |
424 |
ggccatgcacaataatacacttcctatctttgaaattccagattttgtccttaaatttaccttctcca |
491 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
43603598 |
agccatacacaataatacactcactatctttgaaattccagatattgtccttatatttaccttttcca |
43603531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 650 - 812
Target Start/End: Complemental strand, 43609861 - 43609698
Alignment:
| Q |
650 |
ttaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgt |
749 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||| || ||||||||| || | |
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| T |
43609861 |
ttaatgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtat |
43609762 |
T |
|
| Q |
750 |
aagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggat |
812 |
Q |
| |
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||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||||||| |
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| T |
43609761 |
aagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggat |
43609698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 642 - 812
Target Start/End: Complemental strand, 43603461 - 43603290
Alignment:
| Q |
642 |
gatgaaaattaatgtgg-ttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatag |
740 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| |||||||||||| || |
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| T |
43603461 |
gatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaag |
43603362 |
T |
|
| Q |
741 |
cagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
812 |
Q |
| |
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|||| |||||| |||| |||||||||| |||||||| || ||||||||||||||||| |||| ||| ||||| |
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| T |
43603361 |
cagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat |
43603290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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