View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_118 (Length: 248)
Name: NF5654_2D_low_118
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_118 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3778701 - 3778930
Alignment:
| Q |
1 |
cgaagagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagttta |
100 |
Q |
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| T |
3778701 |
cgaagagatggcatggattgaaccaccgcgagttcaatttccaagacaacatcgtgtggcaagtcttgtttgtttattggagggaggaaagtgcagttta |
3778800 |
T |
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| Q |
101 |
tggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaat |
200 |
Q |
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| T |
3778801 |
tggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaat |
3778900 |
T |
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| Q |
201 |
tagtctcttgcaaaactcaataatagaact |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3778901 |
tagtctcttgcaaaactcaataatagaact |
3778930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3707155 - 3706926
Alignment:
| Q |
1 |
cgaagagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagttta |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||| |||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
3707155 |
cgaagagatggcatggattgaaccaccgcgagttcaatttccatgccaacatcgtgtgggaagtctagtttgtttattggagggaggaaactgcagctta |
3707056 |
T |
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| Q |
101 |
tggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaat |
200 |
Q |
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| T |
3707055 |
tggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaat |
3706956 |
T |
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| Q |
201 |
tagtctcttgcaaaactcaataatagaact |
230 |
Q |
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| T |
3706955 |
tagtctcttgcaaaactcaataatagaact |
3706926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 3718610 - 3718435
Alignment:
| Q |
55 |
tgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaa |
154 |
Q |
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| T |
3718610 |
tgtggtaagtcttgtttgtttattggagggaggaaagtgcattttatggatgacggaagagactcaagtaatttgagggtggcagggattggtgcatcaa |
3718511 |
T |
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| Q |
155 |
tggtggggaagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaact |
230 |
Q |
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| T |
3718510 |
tggtggggaagatgcaagtgacatgaatgtggtgatggagatgaattaatctcttgcaaaactcaataatagaact |
3718435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 3771076 - 3771269
Alignment:
| Q |
37 |
atttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtgg |
136 |
Q |
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| T |
3771076 |
atttccaagacaaaatcgcgtggtaagtcttgtttgttaattggagggaggaaagtgcagtttatggatgaaggaagagattcaagtaatttgagggtgg |
3771175 |
T |
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| Q |
137 |
cagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaact |
230 |
Q |
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| T |
3771176 |
cagggattggtgcatcaatagtggagaagatgcaagtgatatgaatgtggtgatggagatgaattagtctcttgcagaactcaataatagaact |
3771269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 3700412 - 3700254
Alignment:
| Q |
63 |
gtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtgggg |
162 |
Q |
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||||||| |||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3700412 |
gtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggcagggataggtgcatcaatagtgggg |
3700313 |
T |
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| Q |
163 |
aagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaat |
221 |
Q |
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| T |
3700312 |
aagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaat |
3700254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 33005990 - 33006148
Alignment:
| Q |
63 |
gtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtgggg |
162 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33005990 |
gtcttgtttttttattggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggtgcatcaatggtgggg |
33006089 |
T |
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| Q |
163 |
aagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaat |
221 |
Q |
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| T |
33006090 |
aagatgcaagtgatttggaagtggttatggacttgaatgagtctcttgcagaactcaat |
33006148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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