View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_126 (Length: 241)
Name: NF5654_2D_low_126
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 37320614 - 37320741
Alignment:
| Q |
21 |
catcacgatgcaatatgattagccattcaacaatatatgtcgtgttttgt-ttaaagtcaaagattgaagtggtttgctttataacactatgtatttggg |
119 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37320614 |
catcacgatgcaatatgattggctattcaacaatatatgtcgtgttttgtgttaaagtcaaagattgaagtggtttgctttataacgctatgtatttggg |
37320713 |
T |
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| Q |
120 |
gaagatttcgggatcaaacaattcgcta |
147 |
Q |
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| T |
37320714 |
gaagatttcgggatcaaacaattcgcta |
37320741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 37321217 - 37321292
Alignment:
| Q |
148 |
attcataattgatgtgagactaatcattcacacactcacgcttgatgacttgaacttcaacaaaatcttaatagaa |
223 |
Q |
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| T |
37321217 |
attcataattgatgtgagactaatcattcatacactcacgcttgatgacttgaacttcaacaaaatcttaatagaa |
37321292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 16756189 - 16756237
Alignment:
| Q |
74 |
aagtcaaagattgaagtggtttgctttataacactatgtatttggggaa |
122 |
Q |
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| T |
16756189 |
aagtcaaagattgaagtggtttgatttataacacaatgcatttcgggaa |
16756237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 32981476 - 32981444
Alignment:
| Q |
148 |
attcataattgatgtgagactaatcattcacac |
180 |
Q |
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| T |
32981476 |
attcataattgatgtgagactaattattcacac |
32981444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 173
Target Start/End: Complemental strand, 43355244 - 43355215
Alignment:
| Q |
144 |
gctaattcataattgatgtgagactaatca |
173 |
Q |
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| T |
43355244 |
gctaattcataattgatgtgagactaatca |
43355215 |
T |
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