View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_129 (Length: 240)
Name: NF5654_2D_low_129
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_129 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 22757050 - 22757111
Alignment:
| Q |
163 |
aggaactaaatcagaggattccattgttcaaacttcccaacaagatcctttgtcgtgatgtc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22757050 |
aggaactaaatcagaggattccattgttcaaacttcccaacaagatcctttgtcgtgttgtc |
22757111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 22756863 - 22756809
Alignment:
| Q |
115 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaact |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756863 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaact |
22756809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22756984 - 22756928
Alignment:
| Q |
1 |
ccttaaccaaaacaaaaaat-agaatcaagcatatatccaaattccaagcatcttaa |
56 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22756984 |
ccttaaccaaaacaaaaaattagaatcaagcatatatccaaattcccagcatcttaa |
22756928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 7077583 - 7077636
Alignment:
| Q |
115 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaac |
168 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||| ||| ||| |||||| |
|
|
| T |
7077583 |
ttgttccatgtgtccttgtgggaaatagaaaacactttgaccaacacaaggaac |
7077636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University