View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_13 (Length: 843)
Name: NF5654_2D_low_13
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 325 - 824
Target Start/End: Original strand, 45365871 - 45366372
Alignment:
| Q |
325 |
gtaatagaaacatgcctcaggacaacagggtcccaaaagcattcgttaatcagacaccgattcatcttcatcctatgcannnnnnn-aatcgccacaacc |
423 |
Q |
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| T |
45365871 |
gtaatagaaacatgcctcaggacaccagggtcccaaaagcattcgttaatcagacactgattcatcttcgtcctatgcaccccccccaatcgccacaacc |
45365970 |
T |
|
| Q |
424 |
aaactttaatttcgtcaaccaccgccataggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat |
523 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365971 |
aaactttaatttcgtcaaccaccgccaaaggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat |
45366070 |
T |
|
| Q |
524 |
ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45366071 |
ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca |
45366170 |
T |
|
| Q |
624 |
ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaacc-----gtcctgtcacacaaaacacaatcaaccgacatacc |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45366171 |
ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaaccgtcctgtcctgtcacacaaaacacaatcaaccgacatacc |
45366270 |
T |
|
| Q |
719 |
caatggaaggaatgactccaccataccctaagttgaattttgtcggaattctgttatgaagcaatttccataaaaagaccactgccttggaagctgttgg |
818 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45366271 |
caat----ggaatgactccacgataccctaagttgaattttgtcggaattctattatgaagcaatttccataaaaagaccactgccttggaagctgttgg |
45366366 |
T |
|
| Q |
819 |
gctttt |
824 |
Q |
| |
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|||||| |
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| T |
45366367 |
gctttt |
45366372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 45365563 - 45365808
Alignment:
| Q |
18 |
aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365563 |
aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc |
45365662 |
T |
|
| Q |
118 |
tcaatacaacctgaaccc-aaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365663 |
tcaatacaacctgaaccccaaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc |
45365762 |
T |
|
| Q |
217 |
gaaaccaaataaaagacctccacaaaacctactggcactgaggctt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365763 |
gaaaccaaataaaagacctccacaaaacctactggcactgaggctt |
45365808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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