View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_135 (Length: 233)
Name: NF5654_2D_low_135
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 45619131 - 45619250
Alignment:
| Q |
21 |
aggtcggatagtttttcaatttgatttagtttttcgctttcggtcaaatctattagaaatcagacacattaaatgatacatctaaatttttatggagaaa |
120 |
Q |
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| T |
45619131 |
aggtcggatagtttttcgatttgatttggtttttcgctttcagtcaaatctattagaaatcagacacattaaatgatacatctaaatttttatggagaaa |
45619230 |
T |
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| Q |
121 |
acttagaaacggtaccctat |
140 |
Q |
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|||||||||||||||||||| |
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| T |
45619231 |
acttagaaacggtaccctat |
45619250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 45620813 - 45620898
Alignment:
| Q |
127 |
aaacggtaccctatatactgtttatcatgttacccactaataaaaggacaagtagattaaaaatccaggtcataactcgcgttagtt |
213 |
Q |
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| T |
45620813 |
aaacggtacc-tatatactgtttatcatgttacccactaataaaaggacaagtggattaaaaatccaggtcataacttgcgttagtt |
45620898 |
T |
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