View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_low_139 (Length: 232)

Name: NF5654_2D_low_139
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_low_139
NF5654_2D_low_139
[»] chr7 (16 HSPs)
chr7 (16-232)||(26030751-26030967)
chr7 (132-181)||(12242125-12242174)
chr7 (135-187)||(2221849-2221901)
chr7 (135-193)||(6552398-6552456)
chr7 (138-187)||(40371730-40371779)
chr7 (135-171)||(1422798-1422834)
chr7 (132-188)||(24545672-24545728)
chr7 (135-186)||(753339-753390)
chr7 (135-194)||(45777286-45777345)
chr7 (139-185)||(3501101-3501147)
chr7 (135-193)||(22388032-22388090)
chr7 (139-184)||(37497897-37497942)
chr7 (135-191)||(7100747-7100803)
chr7 (138-198)||(25660004-25660064)
chr7 (135-171)||(28702641-28702677)
chr7 (138-198)||(47134866-47134926)
[»] chr5 (18 HSPs)
chr5 (135-198)||(26516182-26516245)
chr5 (139-230)||(18902689-18902782)
chr5 (138-198)||(40534082-40534141)
chr5 (137-193)||(912995-913051)
chr5 (135-187)||(14257349-14257401)
chr5 (130-166)||(28351115-28351151)
chr5 (135-183)||(38149379-38149427)
chr5 (135-178)||(4855597-4855640)
chr5 (159-198)||(6738530-6738569)
chr5 (135-198)||(35055096-35055159)
chr5 (135-198)||(35071838-35071901)
chr5 (135-185)||(8471993-8472043)
chr5 (138-184)||(13782003-13782049)
chr5 (135-192)||(27104543-27104600)
chr5 (130-199)||(39257508-39257577)
chr5 (135-187)||(33961587-33961639)
chr5 (135-187)||(36542415-36542467)
chr5 (142-186)||(38819710-38819754)
[»] chr4 (15 HSPs)
chr4 (135-198)||(24193469-24193532)
chr4 (139-194)||(8356667-8356722)
chr4 (135-198)||(24443922-24443985)
chr4 (135-198)||(46053584-46053647)
chr4 (135-197)||(21893408-21893470)
chr4 (129-169)||(4430185-4430225)
chr4 (135-198)||(41162176-41162239)
chr4 (129-179)||(927186-927236)
chr4 (138-198)||(29563521-29563579)
chr4 (135-199)||(485965-486029)
chr4 (135-175)||(8403542-8403581)
chr4 (135-191)||(12162838-12162894)
chr4 (135-183)||(25548381-25548429)
chr4 (135-187)||(36461956-36462008)
chr4 (135-187)||(43372103-43372155)
[»] chr8 (17 HSPs)
chr8 (135-193)||(7026615-7026673)
chr8 (138-198)||(34563137-34563197)
chr8 (135-198)||(2107449-2107512)
chr8 (135-198)||(12972740-12972803)
chr8 (135-198)||(31875682-31875745)
chr8 (135-198)||(35869721-35869784)
chr8 (135-187)||(29592666-29592718)
chr8 (135-187)||(31884478-31884530)
chr8 (139-187)||(39392795-39392843)
chr8 (135-186)||(12291759-12291810)
chr8 (139-198)||(35453746-35453805)
chr8 (137-184)||(40888451-40888498)
chr8 (160-193)||(8578531-8578564)
chr8 (131-180)||(31188120-31188169)
chr8 (135-187)||(5226486-5226538)
chr8 (135-187)||(5383043-5383095)
chr8 (135-187)||(10722515-10722567)
[»] chr6 (8 HSPs)
chr6 (135-187)||(2023763-2023815)
chr6 (138-187)||(32975865-32975914)
chr6 (135-187)||(4247218-4247270)
chr6 (135-193)||(21919958-21920016)
chr6 (135-193)||(30865358-30865416)
chr6 (132-198)||(31337904-31337970)
chr6 (138-187)||(28660221-28660269)
chr6 (135-187)||(14340937-14340989)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-198)||(27460-27523)
[»] chr2 (13 HSPs)
chr2 (135-198)||(33197362-33197425)
chr2 (138-194)||(15200456-15200512)
chr2 (135-198)||(4550661-4550724)
chr2 (138-181)||(43635240-43635283)
chr2 (130-180)||(5942804-5942854)
chr2 (135-193)||(19333413-19333471)
chr2 (135-193)||(34339790-34339848)
chr2 (135-184)||(15119724-15119773)
chr2 (138-187)||(29503215-29503264)
chr2 (138-187)||(43456819-43456868)
chr2 (138-198)||(2400043-2400103)
chr2 (130-198)||(11393489-11393557)
chr2 (130-198)||(11410150-11410218)
[»] scaffold0100 (1 HSPs)
scaffold0100 (132-198)||(42498-42564)
[»] chr3 (12 HSPs)
chr3 (135-185)||(23530322-23530372)
chr3 (130-187)||(20143818-20143875)
chr3 (130-187)||(23269314-23269371)
chr3 (142-191)||(39342924-39342973)
chr3 (140-187)||(29094270-29094317)
chr3 (137-168)||(40294400-40294431)
chr3 (135-193)||(2621045-2621103)
chr3 (135-193)||(27294240-27294298)
chr3 (135-189)||(51206636-51206689)
chr3 (132-169)||(20211073-20211110)
chr3 (132-193)||(44240044-44240105)
chr3 (135-187)||(20874434-20874486)
[»] chr1 (19 HSPs)
chr1 (139-181)||(44116026-44116068)
chr1 (137-198)||(52013783-52013844)
chr1 (135-192)||(52542448-52542505)
chr1 (130-178)||(29665890-29665938)
chr1 (135-187)||(30237880-30237932)
chr1 (135-198)||(49560682-49560745)
chr1 (134-184)||(2522520-2522570)
chr1 (137-183)||(24775161-24775207)
chr1 (130-199)||(7274061-7274129)
chr1 (168-225)||(14737794-14737851)
chr1 (135-224)||(17631191-17631280)
chr1 (137-198)||(28767982-28768043)
chr1 (147-192)||(45975836-45975881)
chr1 (130-186)||(12519105-12519161)
chr1 (135-187)||(23895220-23895272)
chr1 (130-198)||(35350500-35350568)
chr1 (139-183)||(37654605-37654649)
chr1 (135-187)||(48133073-48133125)
chr1 (145-193)||(49125728-49125776)
[»] scaffold0085 (1 HSPs)
scaffold0085 (135-187)||(26175-26227)
[»] scaffold0153 (2 HSPs)
scaffold0153 (135-193)||(6625-6683)
scaffold0153 (135-193)||(13645-13703)
[»] scaffold0091 (1 HSPs)
scaffold0091 (135-187)||(5903-5955)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 26030751 - 26030967
Alignment:
Q  16 cactcttactaaactggataagctagtcaatattgctcaagttatgccttgtgtatgccaggtacaattatgtttactctacaaagattcatttaatgtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26030751 cactcttactaaactggataagctagtcaatattgctcaagttatgccttctgtatgccaggtacaattatgtttactctacgaagattcatttaatgtc 26030850  T
Q  116 tcaagttctatgctcttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttatatttataacaacagataa 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26030851 tcaagttctatgctcttgcttggataaccaacttaattaaacatttatagcataagcacttatcatataagtacttatttatatttataacaacagataa 26030950  T
Q  216 aataaagtcacaagtgc 232  Q
    |||||||||||||||||    
T  26030951 aataaagtcacaagtgc 26030967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 12242125 - 12242174
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcataagcacttatcat 181  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  12242125 tgcttggataaacaactcaattaaacacttatagcataagctcttatcat 12242174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 2221849 - 2221901
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||| ||||    
T  2221849 ttggataaacaacttaattaaacacttatagcataagcgcttaccataaaagt 2221901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 6552456 - 6552398
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    |||||||| ||||||||||||||| ||| | |||||| ||||||||||||||| |||||    
T  6552456 ttggataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttat 6552398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 40371779 - 40371730
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||| | ||||||||||||| || |||||||||||    
T  40371779 gataaacaacttaattaaagacttatagcataagcgctaatcatataagt 40371730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 1422798 - 1422834
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataag 171  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1422798 ttggataaacagcttaattaaacatttatagcataag 1422834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 24545672 - 24545728
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagta 188  Q
    |||||||||||||||||||||||| |  |||| | |||| |||||||||||||||||    
T  24545672 tgcttggataaacaacttaattaagcggttattggataaacacttatcatataagta 24545728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 753390 - 753339
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataag 186  Q
    |||||||||||||||||||||   |||||||||||| || ||||||||||||    
T  753390 ttggataaacaacttaattaagtgtttatagcataaacatttatcatataag 753339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 45777345 - 45777286
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatt 194  Q
    ||||||||||||||| || ||||  |||||||| || |||||||||||||||| ||||||    
T  45777345 ttggataaacaacttgatcaaacggttatagcacaaacacttatcatataagtgcttatt 45777286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 3501147 - 3501101
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatataa 185  Q
    |||||||||||||||||||| ||||| |||||||| |||||| ||||    
T  3501147 ataaacaacttaattaaacacttataacataagcagttatcacataa 3501101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 22388090 - 22388032
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||| |  ||||| ||||| |||||||||| ||||| |||||    
T  22388090 ttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttat 22388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 37497942 - 37497897
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatata 184  Q
    ||||||||||||||||| || |||||| |||||| |||||||||||    
T  37497942 ataaacaacttaattaagcacttatagtataagcgcttatcatata 37497897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 7100803 - 7100747
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtactt 191  Q
    |||||||||| |||||||||||   |||||| ||||||  |||||||||||||||||    
T  7100803 ttggataaactacttaattaaatgcttatagtataagcgtttatcatataagtactt 7100747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 25660064 - 25660004
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||  |||||||||||||||||| |||| || |||||| |||||| ||||| ||||    
T  25660064 gataaacagtttaattaaacatttatagtataaacaattatcacataagtgcttatgtata 25660004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 28702641 - 28702677
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataag 171  Q
    ||||||||||||||||||||| || ||||||||||||    
T  28702641 ttggataaacaacttaattaagcacttatagcataag 28702677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 47134926 - 47134866
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||||||| | || ||||||||| | |||||| ||||||||| ||||| ||||    
T  47134926 gataaacaacttaattgagcacttatagcattaacacttaccatataagtccttatctata 47134866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 26516182 - 26516245
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||| |  ||||||||||||| |||||||||||||| ||||| ||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtata 26516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 18902689 - 18902782
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata---tttataacaacagataaaataaagtcacaagt 230  Q
    ||||||||||||||||| || ||||||  ||||||||||| |||||||| ||||| ||||   ||| |||||| || ||||||||||||||||||    
T  18902689 ataaacaacttaattaatcacttatagtgtaagcacttat-atataagttcttatgtataacctttttaacaaaaggtaaaataaagtcacaagt 18902782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 40534082 - 40534141
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||| ||||    
T  40534082 gataaacaactta-ttaaacacttatagcataagcgcttatcatataaggacttatgtata 40534141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 913051 - 912995
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||   |||||  |||| ||||||||||||||||||||||    
T  913051 ggataaacaacttaattaaatgcttatactataaacacttatcatataagtacttat 912995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 14257349 - 14257401
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||||| || ||||| |||||||||| | |||||||||    
T  14257349 ttggataaacaacttaattaagcacttataacataagcactaaacatataagt 14257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 28351151 - 28351115
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagc 166  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28351151 cttgattggataaacaacttaattaaacatttatagc 28351115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 38149427 - 38149379
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatat 183  Q
    |||||||||||||||||||||| | ||||||||||| |||||| |||||    
T  38149427 ttggataaacaacttaattaaatagttatagcataaacacttaccatat 38149379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 4855597 - 4855640
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttat 178  Q
    |||||||||||||||||||||| | |||||||||||| ||||||    
T  4855597 ttggataaacaacttaattaaatacttatagcataagtacttat 4855640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 6738569 - 6738530
Alignment:
Q  159 tttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  6738569 tttatagcataaacacttatcatataagtacttatgtata 6738530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 35055096 - 35055159
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||| |||||||||||||||| || ||||| || ||||| ||| ||||||||||||||| ||||    
T  35055096 ttgggtaaacaacttaattaagcacttataacacaagcatttaacatataagtacttatatata 35055159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 35071838 - 35071901
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||| |||||||||||||||| || ||||| || ||||| ||| ||||||||||||||| ||||    
T  35071838 ttgggtaaacaacttaattaagcacttataacacaagcatttaacatataagtacttatatata 35071901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 8471993 - 8472043
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataa 185  Q
    ||||||||||||| ||||||||   || |||||||||||||||||||||||    
T  8471993 ttggataaacaacgtaattaaatgcttttagcataagcacttatcatataa 8472043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 13782049 - 13782003
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatata 184  Q
    |||||||||||||||||| |  |||| ||||||||||||||||||||    
T  13782049 gataaacaacttaattaagcgcttatggcataagcacttatcatata 13782003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 27104600 - 27104543
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtactta 192  Q
    ||||| |||||||| |||| |||  ||||||||||| |||||||||||||||| ||||    
T  27104600 ttggaaaaacaactcaatttaacgcttatagcataaacacttatcatataagtgctta 27104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 39257577 - 39257508
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttatat 199  Q
    |||| ||||||||||||||||||||| |  ||||||||||| |  ||||||| ||||| ||||| |||||    
T  39257577 cttgtttggataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatat 39257508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 33961587 - 33961639
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||| |||| ||||||||||   ||||||| |||||||||||||||||||||    
T  33961587 ttggagaaacgacttaattaagtgtttatagtataagcacttatcatataagt 33961639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 36542467 - 36542415
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||| |||||| |||||| |||||| |||||| | |||||||||||||    
T  36542467 ttggataaaaaacttatttaaacgtttataacataagtatttatcatataagt 36542415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 38819754 - 38819710
Alignment:
Q  142 aacaacttaattaaacatttatagcataagcacttatcatataag 186  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||    
T  38819754 aacaatttaattaaatttttatggcataagcacttatcatataag 38819710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 24193469 - 24193532
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||| | || ||||||||||| | |||||||||||||||||||| ||||    
T  24193469 ttggataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgtata 24193532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 8356667 - 8356722
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatt 194  Q
    ||||||||||| ||||||| ||||||||||||||||| || ||||||||| |||||    
T  8356667 ataaacaacttgattaaacgtttatagcataagcactaataatataagtatttatt 8356722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 24443922 - 24443985
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||| ||||||| ||||| |  |||||||||||||||||||||||||||| ||||| ||||    
T  24443922 ttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtata 24443985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 46053584 - 46053647
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||| ||||||||| |  ||||||||| || ||||||||||||||||||||| ||||    
T  46053584 ttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtata 46053647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 21893408 - 21893470
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttat 197  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| | ||| |||||||||    
T  21893408 ttggataaacagcttaattaaacatgtatagcatagacacttatcatcttagtgcttatttat 21893470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 4430225 - 4430185
Alignment:
Q  129 tcttgcttggataaacaacttaattaaacatttatagcata 169  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  4430225 tcttgtttggataaacaacttagttaaacatttatagcata 4430185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 41162239 - 41162176
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||| || ||||| |||||||  ||||||| ||||| |||| |||||    
T  41162239 ttggataaacaacttaattaagcacttataacataagcgtttatcatttaagttcttacttata 41162176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 927186 - 927236
Alignment:
Q  129 tcttgcttggataaacaacttaattaaacatttatagcataagcacttatc 179  Q
    ||||| ||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  927186 tcttgtttggatagacaacttcattaaacatttatagtataaccacttatc 927236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 29563579 - 29563521
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||  ||||||||||| |||||||  ||||||||| ||| ||||    
T  29563579 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatata 29563521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 485965 - 486029
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttatat 199  Q
    |||||| ||| |||||||||| |  ||||||||||||| ||||||||| |||| ||||| |||||    
T  485965 ttggatgaactacttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatat 486029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 8403581 - 8403542
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcact 175  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  8403581 ttggataaataa-ttaattaaacatttatagcataagcact 8403542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 12162838 - 12162894
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtactt 191  Q
    ||||||||||| ||||||||| | |||| ||||| |||| |||||||||| ||||||    
T  12162838 ttggataaacagcttaattaagcgtttacagcatgagcatttatcatatatgtactt 12162894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 25548429 - 25548381
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatat 183  Q
    |||||||||||||||| |||| |  ||||||| ||||||||||||||||    
T  25548429 ttggataaacaacttatttaagccgttatagcttaagcacttatcatat 25548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 36461956 - 36462008
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||| |||||||| ||| |  ||||||||||| ||||||||||||||||    
T  36461956 ttggataaccaacttaaataagcgcttatagcataaccacttatcatataagt 36462008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 43372155 - 43372103
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||| |||| |||||  |||||||||||||| ||| |||||||||    
T  43372155 ttggataaacaatttaagtaaacgattatagcataagcatttaccatataagt 43372103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 7026615 - 7026673
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||| |||||| ||||||| || ||||||||||||| |||||    
T  7026615 ttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttat 7026673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 34563137 - 34563197
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||  ||||||||||| || ||||||||||||| ||||| ||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatata 34563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 2107512 - 2107449
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||| | |||||||| || || |||||||||||||| ||||| ||||    
T  2107512 ttggataaacaacttaattaagcgtttatagcttatgcgcttatcatataagttcttatgtata 2107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 12972740 - 12972803
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||| ||||||||||||||| |  |||||||||||||| ||||||||||||| ||||| ||||    
T  12972740 ttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtata 12972803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 31875745 - 31875682
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||| |||||||||| || | |||||||||||||| |||||||||||||| ||||| ||||    
T  31875745 ttggatagacaacttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctata 31875682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 35869721 - 35869784
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||| ||||||| ||||| |  |||||||||||||||||||||||||||| ||||| ||||    
T  35869721 ttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtata 35869784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 29592718 - 29592666
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||| |||  |||||||||||||||  ||||||||||||||    
T  29592718 ttggataaacaacttagttatgcatttatagcataagttcttatcatataagt 29592666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 31884478 - 31884530
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||| |||||| || ||||||||||||| ||||||||| ||||    
T  31884478 ttggataaacaactcaattaagcacttatagcataagcgcttatcatacaagt 31884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 39392843 - 39392795
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  39392843 ataaataacttaattaagcatttatagcataagtgcttatcatataagt 39392795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 12291810 - 12291759
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataag 186  Q
    ||||||||||||||||||||| || || | |||||| |||||||||||||||    
T  12291810 ttggataaacaacttaattaagcacttttggcataaacacttatcatataag 12291759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 35453805 - 35453746
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||||||||    ||||||||||||| ||| |||||||||||||||| ||||    
T  35453805 ataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatata 35453746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 40888451 - 40888498
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcataagcacttatcatata 184  Q
    ||||||||||||||||||| || ||||||||||  |||||||||||||    
T  40888451 ggataaacaacttaattaagcacttatagcatatacacttatcatata 40888498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 8578531 - 8578564
Alignment:
Q  160 ttatagcataagcacttatcatataagtacttat 193  Q
    |||||||||||||||||||||||||||| |||||    
T  8578531 ttatagcataagcacttatcatataagtgcttat 8578564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 31188120 - 31188169
Alignment:
Q  131 ttgcttggataaacaacttaattaaacatttatagcataagcacttatca 180  Q
    |||||||||||||||  |||||||| | |||||||||| |||||||||||    
T  31188120 ttgcttggataaacattttaattaagcgtttatagcattagcacttatca 31188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 5226486 - 5226538
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||| ||   |||||||||||| || |||||||||||||    
T  5226486 ttggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5226538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 5383043 - 5383095
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||| |||||||||| | ||||| || || ||||||||||||||||    
T  5383043 ttggataaacagcttaattaaatacttataacaaaaacacttatcatataagt 5383095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 10722515 - 10722567
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||||| |  ||| ||||||| ||| ||||||||||||    
T  10722515 ttggataaacaacttaattaagcgcttaaagcataaacacatatcatataagt 10722567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 2023815 - 2023763
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||||| || |||||| ||| |||||||||||||||||    
T  2023815 ttggataaacaacttaattaagcacttatagtataggcacttatcatataagt 2023763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 32975865 - 32975914
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  32975865 gataaacaacttaattaagcgtttatagcataagcgcttctcatataagt 32975914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 4247270 - 4247218
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||||||    |||||||||||| |||||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataagt 4247218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 21919958 - 21920016
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||  ||||||||||| |  |||||||||||| ||||||||||||||| |||||    
T  21919958 ttggataagaaacttaattaagcgcttatagcataagtacttatcatataagtgcttat 21920016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 30865358 - 30865416
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||| |||||||| ||||||  | ||||| |||||| |||||    
T  30865358 ttggataaacaacttaattaagcatttataacataagttcctatcacataagtgcttat 30865416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 31337904 - 31337970
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||  | ||||||||||  |||||||||||||| |||||  ||||||||||||| ||||    
T  31337904 tgcttggataagaagcttaattaaatgtttatagcataagcgcttattgtataagtacttatgtata 31337970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 28660269 - 28660221
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  28660269 gataaacaacttaattaat-atttatagtataaacacttatcatataagt 28660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 14340989 - 14340937
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||||||    ||||| ||||| ||||||||||||||||    
T  14340989 ttggataaacaacttaattaagtgcttataacataaacacttatcatataagt 14340937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 27460 - 27523
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||||| ||||| ||||| ||||    
T  27460 ttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtata 27523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 33197425 - 33197362
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||||| ||||||||| ||||| ||||| | |||||||||||||| ||||| ||||    
T  33197425 ttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctata 33197362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 15200512 - 15200456
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatt 194  Q
    |||||| ||||||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  15200512 gataaaaaacttaattaagcatttatagcataaccatttatcgtataagtgcttatt 15200456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 4550661 - 4550724
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||||||||||||  | ||||||||||| | ||||||| |||||| ||||| ||||    
T  4550661 ttggataaacaacttaattaacaacttatagcataatctcttatcacataagtgcttatgtata 4550724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 43635283 - 43635240
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcat 181  Q
    |||||||| ||||||||| || ||||||||||||||||||||||    
T  43635283 gataaacagcttaattaagcacttatagcataagcacttatcat 43635240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 5942804 - 5942854
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatca 180  Q
    |||| ||||||||||||||||||||| |  |||| ||||||||||||||||    
T  5942804 cttgtttggataaacaacttaattaagcgcttattgcataagcacttatca 5942854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 19333471 - 19333413
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    |||||||| ||||| ||||||||  |||||||||||||||||| || |||||| |||||    
T  19333471 ttggataatcaactaaattaaacgcttatagcataagcacttaccacataagtgcttat 19333413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 34339790 - 34339848
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||    
T  34339790 ttggataaacaacttaagtaaacacttttagtataagtacttatcatatatgcacttat 34339848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 15119724 - 15119773
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatata 184  Q
    |||||||||||| |||| ||| || |||||||||||||| ||||||||||    
T  15119724 ttggataaacaatttaaataaccacttatagcataagcaattatcatata 15119773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 29503264 - 29503215
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||| ||||||||||| ||||| |||||||||||||||| ||| ||||    
T  29503264 gataaaaaacttaattaagcatttgtagcataagcacttattatagaagt 29503215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 43456868 - 43456819
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||| ||||||||||| || |||||||||||||| |||||| ||||||    
T  43456868 gataaaaaacttaattaagcacttatagcataagcatttatcacataagt 43456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 2400043 - 2400103
Alignment:
Q  138 gataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||| ||||||||||  ||||| |||||| || ||||||||||||| ||||| ||||    
T  2400043 gataaacaccttaattaaatgtttatggcataaacaattatcatataagtgcttatgtata 2400103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 11393557 - 11393489
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||| ||||||||||| ||||||||| || |||||||| |||   ||||||||||||| ||||| ||||    
T  11393557 cttgtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctata 11393489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 11410218 - 11410150
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||| ||||||||||| ||||||||| || |||||||| |||   ||||||||||||| ||||| ||||    
T  11410218 cttgtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctata 11410150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 42498 - 42564
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||| ||||||||||||||||||||| |||||||| |  || ||||||||||||| ||||| ||||    
T  42498 tgcttagataaacaacttaattaaacacttatagcagacacatttatcatataagtgcttatgtata 42564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 23530372 - 23530322
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataa 185  Q
    |||||||||| |||||||||| ||||||||| ||| |||||||||||||||    
T  23530372 ttggataaaccacttaattaagcatttatagaatatgcacttatcatataa 23530322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 20143818 - 20143875
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||| ||||||||||||||||| ||||  |||||||||||| ||||||| ||||||||    
T  20143818 cttgtttggataaacaacttaactaaaggtttatagcataaacacttattatataagt 20143875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 23269371 - 23269314
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||| ||||||||||||||||| ||||  |||||||||||| ||||||| ||||||||    
T  23269371 cttgtttggataaacaacttaactaaaggtttatagcataaacacttattatataagt 23269314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 39342924 - 39342973
Alignment:
Q  142 aacaacttaattaaacatttatagcataagcacttatcatataagtactt 191  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||||||    
T  39342924 aacaacttaattaagcgtttatagcataatcacttatcatttaagtactt 39342973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 29094270 - 29094317
Alignment:
Q  140 taaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  29094270 taaacagcttaattaaacgcttatagcataaacacttatcatataagt 29094317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 40294400 - 40294431
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcat 168  Q
    ||||||||||||||||||||||||||||||||    
T  40294400 ggataaacaacttaattaaacatttatagcat 40294431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 2621103 - 2621045
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    |||||||||||||||||| |||   |||| |||||| ||||||| ||||||||||||||    
T  2621103 ttggataaacaacttaatgaaatgcttattgcataaacacttataatataagtacttat 2621045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 27294240 - 27294298
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||| ||||||||| | ||||||| ||||||||||| | ||||||| |||||    
T  27294240 ttggataaacagcttaattaaccgtttatagtataagcacttaacgtataagtgcttat 27294298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 51206689 - 51206636
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtac 189  Q
    |||||||||||||||||| ||||| | ||||||||||  ||||||||||||||||    
T  51206689 ttggataaacaacttaat-aaacactcatagcataagtgcttatcatataagtac 51206636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 20211110 - 20211073
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcata 169  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  20211110 tgcttggataaacaactcaattaaacacttatagcata 20211073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 44240044 - 44240105
Alignment:
Q  132 tgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    |||||||||||||||||||| |||    ||||||||||| || ||||||||||||| |||||    
T  44240044 tgcttggataaacaacttaagtaagtgcttatagcataatcatttatcatataagtgcttat 44240105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 20874486 - 20874434
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||||||||||||| || |||||||||||   | ||||||||||||    
T  20874486 ttggataaacaacttaattaagcacttatagcataaatgcatatcatataagt 20874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 44116068 - 44116026
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcat 181  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  44116068 ataaacaatttaattaaacatttatagcataagtacttatcat 44116026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 52013783 - 52013844
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||| ||| | ||||| ||||    
T  52013783 ggataaacaacttaattaaacgtttatagcataaatacttatcatgtaaatgcttatgtata 52013844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 52542448 - 52542505
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtactta 192  Q
    ||||||||||||||||||||| |  | ||||||||||||| |||||||||||| ||||    
T  52542448 ttggataaacaacttaattaagcgctgatagcataagcacgtatcatataagtgctta 52542505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 29665938 - 29665890
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttat 178  Q
    |||| ||||||||||| |||||||||||| ||||||||||||| |||||    
T  29665938 cttgtttggataaacagcttaattaaacacttatagcataagcgcttat 29665890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 30237932 - 30237880
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||||||   | |||||||||||||||||| ||||||||    
T  30237932 ttggataaacaacttaattaagtgtctatagcataagcacttattatataagt 30237880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 49560745 - 49560682
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||||||||| ||||   ||||||||||| ||||| ||||||||||| ||||| ||||    
T  49560745 ttggataaacaacttacttaagtgtttatagcatatgcactaatcatataagtgcttatatata 49560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 2522520 - 2522570
Alignment:
Q  134 cttggataaacaacttaattaaacatttatagcataagcacttatcatata 184  Q
    ||||||||||||||||||||||||  |||| ||||| |||| |||||||||    
T  2522520 cttggataaacaacttaattaaacgcttatcgcataggcacctatcatata 2522570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 24775161 - 24775207
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcataagcacttatcatat 183  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||||||||    
T  24775161 ggataaataactaaattaaacacttatagcataaccacttatcatat 24775207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 7274129 - 7274061
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttatat 199  Q
    |||||||||||||||||||||||| | ||  |||||||||||  |||||||||||| | ||||| |||||    
T  7274129 cttgcttggataaacaacttaattgagca-ctatagcataagtgcttatcatataaatgcttatgtatat 7274061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 14737851 - 14737794
Alignment:
Q  168 taagcacttatcatataagtacttatttatatttataacaacagataaaataaagtca 225  Q
    ||||||||||||||||| || || | |||| | |||||||| ||||||||||||||||    
T  14737851 taagcacttatcatatatgtgctaagttatttctataacaaaagataaaataaagtca 14737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 17631280 - 17631191
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttatatttataacaacagataaaataaagtc 224  Q
    ||||||||| | ||||||||| || | |||  |||||  |||||||||||||| ||||  ||| | |||||||| |||||||||||||||    
T  17631280 ttggataaatagcttaattaagcactaatactataagtgcttatcatataagtgcttagctatttctataacaaaagataaaataaagtc 17631191  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 28767982 - 28768043
Alignment:
Q  137 ggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||||||||| |||||| |||| |||||| ||||||||||||||| ||| | ||||| ||||    
T  28767982 ggataaacaatttaatttaacacttatagtataagcacttatcatgtaaatgcttatatata 28768043  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 45975836 - 45975881
Alignment:
Q  147 cttaattaaacatttatagcataagcacttatcatataagtactta 192  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||    
T  45975836 cttaactaaacatttatagcaaaaacacttatcatataagtgctta 45975881  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 12519161 - 12519105
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataag 186  Q
    |||||||||||||||||||||| |||   |||||||||||| ||| ||| |||||||    
T  12519161 cttgcttggataaacaacttaactaagtgtttatagcataaacacctattatataag 12519105  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 23895220 - 23895272
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||| || ||||||||||| || ||| ||||||||| ||||||||||||||    
T  23895220 ttggatgaataacttaattaagcacttaaagcataagcccttatcatataagt 23895272  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 35350500 - 35350568
Alignment:
Q  130 cttgcttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttatttata 198  Q
    |||| ||||||||||||| |||||||||   ||||||| || || |||||||| |||| ||||||||||    
T  35350500 cttgtttggataaacaacataattaaacgcatatagcacaaacatttatcatacaagttcttatttata 35350568  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 37654605 - 37654649
Alignment:
Q  139 ataaacaacttaattaaacatttatagcataagcacttatcatat 183  Q
    ||||||||||||||||||||  ||||||||||||  |||||||||    
T  37654605 ataaacaacttaattaaacagatatagcataagcttttatcatat 37654649  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 48133125 - 48133073
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||| ||||||||||||| |  ||||||||||| | ||||||||||||||    
T  48133125 ttggatagacaacttaattaagcgcttatagcataaacgcttatcatataagt 48133073  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 49125728 - 49125776
Alignment:
Q  145 aacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||| |||||| ||||||| | |||||||||||||| |||||    
T  49125728 aacttaattaagcatttacagcataaacgcttatcatataagttcttat 49125776  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 26227 - 26175
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    ||||||||||| |||||||||    ||||||||||||||||||||||||||||    
T  26227 ttggataaacaccttaattaagtgcttatagcataagcacttatcatataagt 26175  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 6683 - 6625
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||||| | |||||||| ||  ||| |||||||| |||||||    
T  6683 ttggataaacaacttaattaaacgtctatagcattagtgcttctcatataaatacttat 6625  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 13703 - 13645
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagtacttat 193  Q
    ||||||||||||||||||||||| | |||||||| ||  ||| |||||||| |||||||    
T  13703 ttggataaacaacttaattaaacgtctatagcattagtgcttctcatataaatacttat 13645  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 5903 - 5955
Alignment:
Q  135 ttggataaacaacttaattaaacatttatagcataagcacttatcatataagt 187  Q
    |||||||||||||||||| ||   |||||||||||| || |||||||||||||    
T  5903 ttggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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