View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_14 (Length: 789)
Name: NF5654_2D_low_14
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 127 - 768
Target Start/End: Original strand, 45620813 - 45621453
Alignment:
| Q |
127 |
aaacggtaccctatatactgtttatcatgttacccactaataaaaggacaagtagattaaaaatccaggtcataactcgcgttagtttttcaattagtag |
226 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45620813 |
aaacggtacc-tatatactgtttatcatgttacccactaataaaaggacaagtggattaaaaatccaggtcataacttgcgttagtttttcaattagtag |
45620911 |
T |
|
| Q |
227 |
gttggtttcttctagctctgttaactaacgtcaaatcaataaaatatccttaattttcaagatcaatatcggattttatacaagattctccatcaannnn |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45620912 |
gttggtttcttctagctctgttaactaacgtcaaatcaataaaatatccttaattttcaagatcaatatcggattttatacaagattctccatcaatttt |
45621011 |
T |
|
| Q |
327 |
nnngtttgatgatcagtaaaattgcagctctataatccttaattttcaacatcattcttagatttcattcttcaattttcatagttcttatgcacagcca |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621012 |
tttgtttgatgatcagtaaaattgcagctctataatccttaattttcaacatcattcttagatttcattcttcaattttcatagttcttatgcacagcca |
45621111 |
T |
|
| Q |
427 |
ccatccattttgttttctatagccacatcaactgccaatttacaaaaatcacatgatttttcccactgcaatcttggatttgctttgagggaaacccaat |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621112 |
ccatccattttgttttctatagccacatcaactgccaatttacaaaaatcacatgatttttcccactgcaatcttggatttgctttgagggaaacccaat |
45621211 |
T |
|
| Q |
527 |
ctctctttcaacactagaagacacggtcacagtaacaaggaaattaatctcaagttgcaatacacatgaatatcattcagtccttgttgtttgataagca |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621212 |
ctctctttcaacactagaagacacggtcacagtaacaaggaaattaatctcaagttgcaatacacatgaatatcattcagtccttgttgtttgataagca |
45621311 |
T |
|
| Q |
627 |
tgaagcttctccagtggatcatggagaagaaaatttaagggggtgccagttggaggtgttaaccaacacagatgactaactagtagtaatagtaaatggg |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45621312 |
tgaagcttctccagtggatcatggagaagaaaatttaagggggtgccagttggaggtgttaaccaacacagatgactaactagtagtaatagtaacaggg |
45621411 |
T |
|
| Q |
727 |
taatcgagataaaatgcagttaatctatacctattaataaag |
768 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45621412 |
taatcgagataaaacgcagttaatctatacctattaataaag |
45621453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 45619131 - 45619250
Alignment:
| Q |
21 |
aggtcggatagtttttcaatttgatttagtttttcgctttcggtcaaatctattagaaatcagacacattaaatgatacatctaaatttttatggagaaa |
120 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45619131 |
aggtcggatagtttttcgatttgatttggtttttcgctttcagtcaaatctattagaaatcagacacattaaatgatacatctaaatttttatggagaaa |
45619230 |
T |
|
| Q |
121 |
acttagaaacggtaccctat |
140 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45619231 |
acttagaaacggtaccctat |
45619250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 5117165 - 5117224
Alignment:
| Q |
531 |
ctttcaacactagaagacacggtcacagtaacaaggaaattaatctcaagttgcaataca |
590 |
Q |
| |
|
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5117165 |
ctttcaaaactaggagacatggtcacagaaacaaggaaattaatctcaagttgcaataca |
5117224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 495
Target Start/End: Original strand, 5116766 - 5116823
Alignment:
| Q |
438 |
gttttctatagccacatcaactgccaatttacaaaaatcacatgatttttcccactgc |
495 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5116766 |
gttttctggagccacatcaactgcctgtttacaaaaatcacatgattttttccactgc |
5116823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 775
Target Start/End: Complemental strand, 29642497 - 29642468
Alignment:
| Q |
746 |
ttaatctatacctattaataaagacaatac |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29642497 |
ttaatctatacctattaataaagacaatac |
29642468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University