View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_141 (Length: 227)
Name: NF5654_2D_low_141
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_141 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 40793683 - 40793609
Alignment:
| Q |
138 |
ataaaaaagatacttgccattgaaggacactttttcatcttttcaacttttgtaacaccaacaaaaacaatcttc |
212 |
Q |
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| T |
40793683 |
ataaaaaagatacttgccattgaaggacactttttcatcttttcaacttttgtaacaccaacaaaaacaatcttc |
40793609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 40793802 - 40793744
Alignment:
| Q |
19 |
agaagttacctatgaaagcctcagcttttgcaaaaagttcttgtccattaacaccataa |
77 |
Q |
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| T |
40793802 |
agaagttacctatgaaagcctcagcttttgcaaaaagttcttgtccattaacaccataa |
40793744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 40786039 - 40785995
Alignment:
| Q |
30 |
atgaaagcctcagcttttgcaaaaagttcttgtccattaacacca |
74 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
40786039 |
atgaaagcttcagcttttgcaaaaagttcttgaccattaacacca |
40785995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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