View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_143 (Length: 225)
Name: NF5654_2D_low_143
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_143 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 12490577 - 12490781
Alignment:
| Q |
18 |
actacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12490577 |
actacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcccttcat |
12490676 |
T |
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| Q |
118 |
ttcctcaaacccaagagtcatagcactcttagacgccgcatctttcccaatcctattcgacaacaaaaaagtcgaaaaactcaacgtcctcgacggcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12490677 |
ttcctcaaacccaagagtcatagcactcttagacgccgcatctttcccgatactcttcgacaacaaaaaagtcgaaaaactcaacgtcctcgacggcaca |
12490776 |
T |
|
| Q |
218 |
ttcat |
222 |
Q |
| |
|
||||| |
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|
| T |
12490777 |
ttcat |
12490781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 12505127 - 12505296
Alignment:
| Q |
23 |
ttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcatttcct |
122 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
12505127 |
ttctataaccaaggcagagacaaattcttctcaacaagaatacaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcatttcct |
12505226 |
T |
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| Q |
123 |
caaacccaagagtcatagcactcttagacgccgcatctttcccaatcctattcgacaacaaaaaagtcga |
192 |
Q |
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|||||||||||||||||||||||||||| || |||| || || ||||| |||||||||||||||||||| |
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| T |
12505227 |
caaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgacaacaaaaaagtcga |
12505296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 25732202 - 25732406
Alignment:
| Q |
18 |
actacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
117 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||| ||| |||||| ||||||||||||| || || ||| | |||||||||||||||| |||||| |
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| T |
25732202 |
actacttctacaaccaaggacgtgacaaatacttccaaaccagaatcgaaaaatacaactccactgtcctcaaactcaacatgccaccaggtggtttcat |
25732301 |
T |
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| Q |
118 |
ttcctcaaacccaagagtcatagcactcttagacgccgcatctttcccaatcctattcgacaacaaaaaagtcgaaaaactcaacgtcctcgacggcaca |
217 |
Q |
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| || |||||| |||||| || || | |||| || || ||||| ||||| ||||||||| ||||||||||||| ||||||||||||| || |
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| T |
25732302 |
cgctccagacccaaaagtcatcgctcttctcgacggtgcttccttccccatcctcttcgacaacgccaaagtcgaaaaacgtgacgtcctcgacggtact |
25732401 |
T |
|
| Q |
218 |
ttcat |
222 |
Q |
| |
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||||| |
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|
| T |
25732402 |
ttcat |
25732406 |
T |
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