View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_147 (Length: 219)
Name: NF5654_2D_low_147
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 42917642 - 42917529
Alignment:
| Q |
88 |
tgaagcagcaatttgataccgcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaag |
187 |
Q |
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| T |
42917642 |
tgaagcagcaatttgatacagcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaag |
42917543 |
T |
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| Q |
188 |
catacaattcatcc |
201 |
Q |
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| T |
42917542 |
catacaattcatcc |
42917529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42917704 - 42917798
Alignment:
| Q |
1 |
attgttaactgatttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcag |
95 |
Q |
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| T |
42917704 |
attgttaactggtttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcag |
42917798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 33965316 - 33965236
Alignment:
| Q |
13 |
tttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagc |
93 |
Q |
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| T |
33965316 |
tttcagctatgatgacctcggagtacaaaagattatacctgatacaacgtttataagaaaatggagccacaaaattgaagc |
33965236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 33965973 - 33966037
Alignment:
| Q |
135 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcat |
199 |
Q |
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| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcat |
33966037 |
T |
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