View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_149 (Length: 218)
Name: NF5654_2D_low_149
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 42917728 - 42917529
Alignment:
| Q |
1 |
atcatcgctgaaatcagttaacaatgtagacnnnnnnnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatgaagcagcaattt |
100 |
Q |
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| T |
42917728 |
atcatcgctgaaaccagttaacaatgtatacaaaaaaaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatgaagcagcaattt |
42917629 |
T |
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| Q |
101 |
gataccgcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
200 |
Q |
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| T |
42917628 |
gatacagcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
42917529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 33965973 - 33966037
Alignment:
| Q |
134 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcat |
198 |
Q |
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|||||||||| ||| ||||||| ||||||||| || |||||||||||||| |||||||| ||||| |
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| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcat |
33966037 |
T |
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