View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_15 (Length: 712)
Name: NF5654_2D_low_15
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 325 - 701
Target Start/End: Original strand, 43360841 - 43361219
Alignment:
| Q |
325 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
424 |
Q |
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| T |
43360841 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
43360940 |
T |
|
| Q |
425 |
cgaaggtgatgttgtannnnnnnaatagtgttaattgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
524 |
Q |
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| T |
43360941 |
cgaaggtgatgttgtatttttttaatagtgttatttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
43361040 |
T |
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| Q |
525 |
aacatagagtggaaattaccacatttgatctttgctttatgcattattgctcacttgttggcaactgaagaagtagttaaca--atgacataaacataca |
622 |
Q |
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| T |
43361041 |
aacatagagtggaaattaccacatttgatctttgctttatgtattattgctcacttgttggcaactgaagaagtagttaacaatatgacataaatataca |
43361140 |
T |
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| Q |
623 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcatctcag |
701 |
Q |
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| T |
43361141 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcatttcag |
43361219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 43360560 - 43360844
Alignment:
| Q |
20 |
tatttctcaaggggaatgattgtgtactgcctaataactactgaaattaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaa |
119 |
Q |
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| T |
43360560 |
tatttctcaaggggaatgattgtgtactgcctaataactactgaaagtaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaa |
43360659 |
T |
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| Q |
120 |
agaggttacggtgacttctgctctgtgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgt |
219 |
Q |
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| T |
43360660 |
agaggttacggtgacttctgctctgtgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgt |
43360759 |
T |
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| Q |
220 |
ttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaaaactgtaaatgtcaagctcacttgaacttggccaaatatc |
304 |
Q |
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| T |
43360760 |
ttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaaagctgtaaatgtcaagctcacttgaacttggccaaatatc |
43360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 49414504 - 49414351
Alignment:
| Q |
186 |
tttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctctt------------caaacaatttcgtgaa-aaataaaaactgtaa |
272 |
Q |
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||||||||||||| |||||||||| |||||| ||||||||||||| |||| |||| |||| ||||| || || |||||||| | ||| |
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| T |
49414504 |
tttgctaacacttaagattttttacattgcacatttgcactgtcatatttcatcttgatgctgtcaagcaaagaattttgtaaataaataaaacccataa |
49414405 |
T |
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| Q |
273 |
atgtcaagctcacttgaacttggccaaatatcaattgttagcctttagcaagta |
326 |
Q |
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| T |
49414404 |
atatcaagctcacttgaacttagccaaatatcaatctttagcctttagcaagta |
49414351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 49414212 - 49414126
Alignment:
| Q |
459 |
ttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgat-tgt--gttagttaaacatagagtggaaatta |
542 |
Q |
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| T |
49414212 |
ttgttgtgtaatgatattcaagctgtgatttacttcaaagtatttgagacatgatgtgttaattagttcgacatagagtggaaatta |
49414126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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