View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_158 (Length: 205)
Name: NF5654_2D_low_158
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_158 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 17748285 - 17748092
Alignment:
| Q |
12 |
gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta |
111 |
Q |
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| T |
17748285 |
gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta |
17748186 |
T |
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| Q |
112 |
gacaacttcatgattctgtctgcaacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctc |
205 |
Q |
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| T |
17748185 |
gactacttcatgattctgtctgcgacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctc |
17748092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 19049605 - 19049412
Alignment:
| Q |
12 |
gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta |
111 |
Q |
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| T |
19049605 |
gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta |
19049506 |
T |
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| Q |
112 |
gacaacttcatgattctgtctgcaacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctc |
205 |
Q |
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| T |
19049505 |
gactacttcatgattctgtctgcgacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctc |
19049412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 8037795 - 8037830
Alignment:
| Q |
163 |
aaacatatctctttcttcttcccacatgaatcccaa |
198 |
Q |
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| T |
8037795 |
aaacatatctctttcttcttccctcatgaatcccaa |
8037830 |
T |
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