View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_2 (Length: 1131)
Name: NF5654_2D_low_2
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-121; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 3809717 - 3809460
Alignment:
| Q |
11 |
gagatggacatcaaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacgtttccttccacagcgtgttttcttatg |
110 |
Q |
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| T |
3809717 |
gagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcgttttttcttatg |
3809618 |
T |
|
| Q |
111 |
ataagcattaccagtctccattacttgtttccatatacgaaaaatgatacttctatgaacatcgtatagtaaagctactcgtgatattacccctggactg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
3809617 |
ataagcattaccagtctccattacttgtttccatatacgataaatgatacttctatgaacatcgtatagtaaagctgctcgggatattacccctggactg |
3809518 |
T |
|
| Q |
211 |
tgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809517 |
tgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
3809460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 271 - 530
Target Start/End: Complemental strand, 3809412 - 3809152
Alignment:
| Q |
271 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattaaagggaaaaaa-tatcgaaattcaattgatat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
3809412 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattatagggaaaaaaatatcgaaattcaattgatat |
3809313 |
T |
|
| Q |
370 |
--atcaactaaaaataacagggcacaaaaaagggaagaatatgtgtcattctactttaaacatgtacctgtagctatatggaattgttgaaagtcatttg |
467 |
Q |
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| T |
3809312 |
ttatcaactaaaaataacaag-cacaaaaaagggaagaatatgtgtcattctactttaaacatgtacatgtagctatatggaattgttgaaagtcatttg |
3809214 |
T |
|
| Q |
468 |
cttcagggaatggcacatactgatcatcttcaactttatgcataatgtgtcattcaagcaaat |
530 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3809213 |
ctttagggaatggcacatactgatcatcttcaactttatgcat-atgtgtcattcaagcaaat |
3809152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 611 - 857
Target Start/End: Complemental strand, 3805141 - 3804895
Alignment:
| Q |
611 |
ttacacaccattttcatttgagcgagaatcggtgctgtttgtttcatcttcaagcgagctgttctggtattgtgtttctacatttgatggtattgtggta |
710 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
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| T |
3805141 |
ttacacaccattttcatttgagcaagaatcggtgctgtttgtttcatcttcaagagaaaaattctggtactgtgtttctacatttgatggtattgtggta |
3805042 |
T |
|
| Q |
711 |
tcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagct |
810 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3805041 |
tcattatcagaaattgaatgttcatgcgtaaaagtgaaagaaacattcaagtctatgttaagaggcatttttaactatggctgaaagttcatacaaagct |
3804942 |
T |
|
| Q |
811 |
ctttttatatagagaatgactggatgtttaaacttcatttctactct |
857 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3804941 |
ctttttatatagagaatgactagatgtttaaacttcatttctactct |
3804895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 922 - 1111
Target Start/End: Complemental strand, 3804829 - 3804640
Alignment:
| Q |
922 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
1021 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804829 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
3804730 |
T |
|
| Q |
1022 |
ttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagttt |
1111 |
Q |
| |
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| T |
3804729 |
ttgtgaggcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctggaatgtaaggtagaagtagttt |
3804640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 680 - 857
Target Start/End: Original strand, 5164866 - 5165043
Alignment:
| Q |
680 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatt |
779 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5164866 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatgtgtaaaagtgaaaggaacattcaagtctatgttaagaggcatt |
5164965 |
T |
|
| Q |
780 |
tttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
857 |
Q |
| |
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| T |
5164966 |
tttaagtatggctgaaagttcatacaaagctctctttatatagagaatgacgggatgtttaaacttcatttctactct |
5165043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 738 - 857
Target Start/End: Original strand, 8435037 - 8435156
Alignment:
| Q |
738 |
gtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgt |
837 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8435037 |
gtaaaagtgaaaggaacattcaagtctatgttaagggacgtttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatgt |
8435136 |
T |
|
| Q |
838 |
ttaaacttcatttctactct |
857 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
8435137 |
ttaaacttcatttctactct |
8435156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 992 - 1111
Target Start/End: Original strand, 27149785 - 27149904
Alignment:
| Q |
992 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
1091 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27149785 |
atgtattcttgtgaagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
27149884 |
T |
|
| Q |
1092 |
atgtaaggtaggagtagttt |
1111 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
27149885 |
atgtaaggtaggagtagttt |
27149904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 992 - 1111
Target Start/End: Original strand, 8435257 - 8435376
Alignment:
| Q |
992 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
1091 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8435257 |
atgtattcttgtgaagagggagaagcatgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
8435356 |
T |
|
| Q |
1092 |
atgtaaggtaggagtagttt |
1111 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8435357 |
atgtaaggtaggagtagttt |
8435376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 922 - 1086
Target Start/End: Original strand, 5165109 - 5165289
Alignment:
| Q |
922 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag-------aatatcaatagccaca----------ataaaacctatgtattcttgtg |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
5165109 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccagaataaaactgatgtattcttgtg |
5165208 |
T |
|
| Q |
1005 |
aagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcag |
1086 |
Q |
| |
|
|||||| |||| |||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5165209 |
aagagg-agaggtgtgtttgtgaggcttgaattgatactcatacaatagctttaatgatagaattacattaattgtaggcag |
5165289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 922 - 955
Target Start/End: Original strand, 8435222 - 8435255
Alignment:
| Q |
922 |
gtggtgggagtttgcctacttttttcaatttgaa |
955 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8435222 |
gtggtgggagtttgcctacttttttcaatttgaa |
8435255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 3809456 - 3809421
Alignment:
| Q |
207 |
actgtgtagttttccatgtccgtcgctcaagctcaa |
242 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
3809456 |
actgtgtagttttccatgtccatcgctcaagctcaa |
3809421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 680 - 857
Target Start/End: Original strand, 31742347 - 31742524
Alignment:
| Q |
680 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatccgtaaaagtgaaaggaacattcaaatctatgttaagaggcatt |
779 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31742347 |
ttgtgtttctacatttgatggtattgttgtatcattatcagaaattgaatgttcatgtgtaaaagtgaaaggaacattcaagtctatgttaagaggcatt |
31742446 |
T |
|
| Q |
780 |
tttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
857 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31742447 |
tttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatggttaaacttcatttctactct |
31742524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 922 - 1084
Target Start/End: Original strand, 31742590 - 31742769
Alignment:
| Q |
922 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag-------aatatcaatagccaca----------ataaaacctatgtattcttgtg |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
31742590 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccataataaaaccgatgtattcttgtg |
31742689 |
T |
|
| Q |
1005 |
aagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggc |
1084 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31742690 |
aagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggc |
31742769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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