View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_23 (Length: 619)
Name: NF5654_2D_low_23
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 42917704 - 42918219
Alignment:
| Q |
1 |
attgttaactgatttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcagtagtt |
100 |
Q |
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| T |
42917704 |
attgttaactggtttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcagtagtt |
42917803 |
T |
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| Q |
101 |
ataacacacggtcatgaagatcatatcggtgcattgccttgggtaatgcttcctactccaaagaaatatattcttttatcaaactagttttctcagattt |
200 |
Q |
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| T |
42917804 |
ataacacacggtcatgaagatcatatcggtgcattgccttgggtaatgcttcctactccaaagaaatatattcttttatcaaactagttttctcagattt |
42917903 |
T |
|
| Q |
201 |
actcccttagttttatttgagtatttttcatgtgatgcaatgcccgttgtttgatgtattctgccataagaaactgagacgtacttaaacaagcacactt |
300 |
Q |
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| T |
42917904 |
actcccttagttttatttgagtatttgtcatgtgatgcaatgcccgttgtttgatgtattctgccataagaaactgagacgtacttaaacaagcacactt |
42918003 |
T |
|
| Q |
301 |
agtttgataaatgaacctacttggtgtctttgctgctatgttaattttaagttggtgcaatgggcttcaagaaagatatacaactatgatcaaagatttt |
400 |
Q |
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| T |
42918004 |
agtttgataaatgaacctacttggtgtctttgctgctatgttaattttaagttggtgcaatgggcttcaagaaagatatacaactatgatcaaagatttt |
42918103 |
T |
|
| Q |
401 |
aaggtctctaatagtgtcttttcgattatagcatgtgtaacgactagaagtcatggatatatttacgggctagttgtaatgaactcttttacaatatcat |
500 |
Q |
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| T |
42918104 |
aaggtctctaatagtgtcttttcgattatagcatgtgtaacgactagaagtcatggatatatttacgggctagttgtaatgaactcttttacaatatcat |
42918203 |
T |
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| Q |
501 |
atatctaaggtaatgg |
516 |
Q |
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| T |
42918204 |
atatctaaggtaatgg |
42918219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 511 - 601
Target Start/End: Complemental strand, 42917619 - 42917529
Alignment:
| Q |
511 |
taatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
601 |
Q |
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| T |
42917619 |
taatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
42917529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 33965316 - 33965175
Alignment:
| Q |
13 |
tttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcagtagttataacacacggt |
112 |
Q |
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||||||| ||||||| || || || || ||||| |||||||||||||| ||||| | |||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
33965316 |
tttcagctatgatgacctcggagtacaaaagattatacctgatacaacgtttataagaaaatggagccacaaaattgaagcgcttgttataacacatggt |
33965217 |
T |
|
| Q |
113 |
catgaagatcatatcggtgcattgccttgggtaatgcttcct |
154 |
Q |
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| T |
33965216 |
catgaagatcatattggtgcgttgccctgggtaatgcttcct |
33965175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 599
Target Start/End: Original strand, 33965973 - 33966037
Alignment:
| Q |
535 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcat |
599 |
Q |
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| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcat |
33966037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 18034510 - 18034448
Alignment:
| Q |
359 |
aatgggcttcaagaaagatatacaactatgatcaaagattttaaggtctctaatagtgtctttt |
422 |
Q |
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||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||| |
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| T |
18034510 |
aatgggcttcaagaatgatatacaactatgatcaaatagattaa-gtctctaataatgtctttt |
18034448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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