View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_26 (Length: 615)
Name: NF5654_2D_low_26
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_26 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 44949511 - 44950112
Alignment:
| Q |
1 |
actataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttacc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44949511 |
actataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttacc |
44949610 |
T |
|
| Q |
101 |
atactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949611 |
atactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgtttt |
44949710 |
T |
|
| Q |
201 |
ccctgctacatatgaggttatagagtttatgttcttcattcgtcagcgacttagacacttttgttgtttccgttgagggaaagcagattcttgcaaacgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949711 |
ccctgctacatatgaggttatagagtttatgttcttcattcgtcagcgacttagacacttttgttgtttccgttgagggaaagcagattcttgcaaacgt |
44949810 |
T |
|
| Q |
301 |
ttcattccttgcaagagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949811 |
ttcattccttgcaagagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttca |
44949910 |
T |
|
| Q |
401 |
agtaaataatacatactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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|
| T |
44949911 |
agtaaataatacatactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacactatccatctaaaattttgaa |
44950010 |
T |
|
| Q |
501 |
catggaaaaaatgaaataggcactatgacaagtcattatgacaatgtagacaaaatgatcattattttaagacatcaatgactgactatgacaactccaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
44950011 |
catggaaaaaatgaaataggcactatgacaagtcattatgacaatgtagacaaaatgatcattattttaagacatcaatgaccgaatatgacaactccaa |
44950110 |
T |
|
| Q |
601 |
ac |
602 |
Q |
| |
|
|| |
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|
| T |
44950111 |
ac |
44950112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 212 - 602
Target Start/End: Original strand, 44943809 - 44944197
Alignment:
| Q |
212 |
atgaggttatagagtttatgttcttcattcgtcagcgacttagacactttt-gttgtttccgttgagggaaagcagattcttgcaaacgtttcattcctt |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
44943809 |
atgaggttatagagtatatgttcttcattcgtcagcgacttagacactttttgttgtttccgttgacggaaagcagattcttgcaaacttttcattcctt |
44943908 |
T |
|
| Q |
311 |
gcaagagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttac-agtttacactttcaagtaaataa |
409 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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|
| T |
44943909 |
tcaagagaaaaatgtcaagca--acgtaattaactaactcattcaaatggttaattgaagatgaaggatactttacaagtttacactttcaagtaaata- |
44944005 |
T |
|
| Q |
410 |
tacatactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaa |
509 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||| | || || || || |||||||||||| || ||||| |
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|
| T |
44944006 |
---atactttcctgaagatgaaattataaattaaaatgttaaatggatcatactagagaa-cattaaatcctatccatctaaaattttgatcactgaaaa |
44944101 |
T |
|
| Q |
510 |
aatgaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatcattattttaagacatc--aatgactgactatgacaactccaaac |
602 |
Q |
| |
|
|| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
44944102 |
aacaaaataggcacgatgacaagtcaatatgcacaatgtagacaaaatgatcattattttaaggcatccatatgactgtctatgacaactccaaac |
44944197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 5 - 602
Target Start/End: Original strand, 6470364 - 6470958
Alignment:
| Q |
5 |
taaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatac |
104 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| |
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| T |
6470364 |
taaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatac |
6470463 |
T |
|
| Q |
105 |
tatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgttttccct |
204 |
Q |
| |
|
| ||| | | ||||||||| | | |||||| | | ||| | ||||||||||| ||||||| |||||||| ||| ||||| ||| ||||||| | |
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|
| T |
6470464 |
t---cttgttcataagtgccttcatgtgtttattaagcgcagcaataggaaggtttgtttctcttctcatgtctgtttttgagatccctgagttttcctt |
6470560 |
T |
|
| Q |
205 |
gctacatatgaggttatagagtttatgttcttcattcgtcagcgacttagacactttt-gttgtttccgttgagggaaagcagattcttgcaaacgtttc |
303 |
Q |
| |
|
|||| ||| |||| ||||||| || | |||||| | | ||||| | |||| |||| || ||||| |||||| | || |||||||||||||||||||| |
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| T |
6470561 |
gctaagtataaggtcatagagtatacgctcttcagttggcagcgcc---gacagtttttgtcgtttctgttgagaggaaccagattcttgcaaacgtttc |
6470657 |
T |
|
| Q |
304 |
attccttgcaagagaaaaatgtcaa-gcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaag |
402 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || ||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
6470658 |
attccttacaagagaaaaatgtcaaagcagagtataattaattatatcattcaaatggttaattgaaaattggaagtactttacagtttacactttcaag |
6470757 |
T |
|
| Q |
403 |
taaataatacatactttcccgaagatgaaattataaattaaaacgttaagtcaatc-ataatagagaacctttgaacccaatttggctaaaatttt-gaa |
500 |
Q |
| |
|
|||||||||| ||||| ||| ||||| ||||||||||||| | | ||| |||| |||||| |||| |||| ||||| || | || ||||||| ||| |
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|
| T |
6470758 |
taaataatac---ttttcctgaaaatgaagttataaattaaaatggtgagtgaatcaataataaagaatctttcaaccctatccgtctcaaattttggaa |
6470854 |
T |
|
| Q |
501 |
catggaaaaaatgaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatc-attattttaagacatcaatgactgactatgacaactcc |
598 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| | ||||| ||||||||||| |||||||||| ||||| |||| |||||||||||||||| |
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|
| T |
6470855 |
catggaaaaaacaaaataggcactatgacaagtcaatatgcattatgtacacaaaatgatcaattattttaacacatctatgattgactatgacaactcc |
6470954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
61 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 381 - 602
Target Start/End: Complemental strand, 418989 - 418766
Alignment:
| Q |
381 |
ctttacagtttacactttcaagtaaataatacatactttcccgaagatgaaattataaattaaaacgttaagtc-----aatcataatagagaacctttg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||| ||| |||||||||| |||| |||| |
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|
| T |
418989 |
ctttacagtttacactttcaagtaaataatat----tttcctgaaaatgaaattataaattaaaatgttgagttgagtgaatcataataaagaatcttta |
418894 |
T |
|
| Q |
476 |
aacccaatttggctaaaattttg-aacatggaaaaaatgaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatc-attattttaaga |
572 |
Q |
| |
|
||||| | | ||||||||||| ||||||||||||||||||||||||| ||||||||||| || | | |||||||| |||| || |||||||||||| |
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|
| T |
418893 |
aaccctactcatctaaaattttggaacatggaaaaaatgaaataggcaccatgacaagtcaataagcattatgtagac--aatgttcaattattttaaga |
418796 |
T |
|
| Q |
573 |
catcaatgactgactatgacaactccaaac |
602 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |
|
|
| T |
418795 |
catctatgattgactatgacaactccaaac |
418766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 5 - 310
Target Start/End: Complemental strand, 419320 - 419020
Alignment:
| Q |
5 |
taaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatac |
104 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
419320 |
taaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatac |
419221 |
T |
|
| Q |
105 |
tatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgttttccct |
204 |
Q |
| |
|
| ||| | | ||||||||| | | |||||| | | ||| | ||||||||||| ||||||| ||||||| ||| ||||| ||| ||||||| | |
|
|
| T |
419220 |
t---cttgttcataagtgccttcatgtgtttattaagcgcagcaataggaaggtttgtttctcttcacatgtctgtttttgagatccctgagttttcctt |
419124 |
T |
|
| Q |
205 |
gctacatatgaggttatagagtttatgttcttcattcgtcagcgacttagaca-cttttgttgtttccgttgagggaaagcagattcttgcaaacgtttc |
303 |
Q |
| |
|
|||| ||| |||| ||||||| || | |||||||| | ||||||| |||| |||||| ||||| |||||| | || |||||||||||||||||||| |
|
|
| T |
419123 |
gctaagtataaggtcatagagtatacgctcttcatttggcagcgac---gacagtttttgtcgtttctgttgagaggaaccagattcttgcaaacgtttc |
419027 |
T |
|
| Q |
304 |
attcctt |
310 |
Q |
| |
|
||||||| |
|
|
| T |
419026 |
attcctt |
419020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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