View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_28 (Length: 594)
Name: NF5654_2D_low_28
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 26187686 - 26187557
Alignment:
| Q |
209 |
aaagtctagttaagagattaatttactgatgctttggcatgaacctactggctactgctagtctccattccattcttgatgcatatgctttgaggaatta |
308 |
Q |
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| T |
26187686 |
aaagtctagttaagagattaatttactgat------------acctactggctactgctagtctccattccattcttgatgcatatgctttgaggaatta |
26187599 |
T |
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| Q |
309 |
ttattattttgataaagagtttgttaacaagtgtatccgagac |
351 |
Q |
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| T |
26187598 |
ttattattttgataaagagtttgtt-acaagtgtatccgagac |
26187557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 26187883 - 26187793
Alignment:
| Q |
13 |
tttggtgttcaacatgtttaatttgtgtaggagaatggaggatggaaaagtaacacaatcatttgcttcttacgttgttaaatgagtagac |
103 |
Q |
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| T |
26187883 |
tttggtcttcaacatgtttaatttgtgtatgagaatggaggatggaaaagtaacacaatcatttgcttcttacgttgttaaatgagtagac |
26187793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 26187470 - 26187421
Alignment:
| Q |
447 |
taacatttaaagtccttaatcagtgcttcgggagcactagttaacatttt |
496 |
Q |
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| T |
26187470 |
taacatttaaagtccttaatcagtgtttcgggggcactagttaacatttt |
26187421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 500
Target Start/End: Complemental strand, 29716777 - 29716727
Alignment:
| Q |
450 |
catttaaagtccttaatcagtgcttcgggagcactagttaacattttcctt |
500 |
Q |
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| T |
29716777 |
catttaaagtccttaaccagtgccccgggggcactagttaacatttccctt |
29716727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 7996802 - 7996848
Alignment:
| Q |
451 |
atttaaagtccttaatcagtgcttcgggagcactagttaacattttc |
497 |
Q |
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| T |
7996802 |
atttaaagtccttaatcaatgcttcggaagtaatagttaacattttc |
7996848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 49421907 - 49421862
Alignment:
| Q |
450 |
catttaaagtccttaatcagtgcttcgggagcactagttaacattt |
495 |
Q |
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| T |
49421907 |
catttaaagtccttaactagtgccccgggagcactagttaacattt |
49421862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 32133707 - 32133658
Alignment:
| Q |
451 |
atttaaagtccttaatcagtgcttcgggagcactagttaacattttcctt |
500 |
Q |
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| T |
32133707 |
atttaaattccttaaccagtgctccgggggcactagttaacatttccctt |
32133658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 25036976 - 25036927
Alignment:
| Q |
451 |
atttaaagtccttaatcagtgcttcgggagcactagttaacattttcctt |
500 |
Q |
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| T |
25036976 |
atttaaaatccttaatcagtacctcggaagcactagtttacattttcctt |
25036927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 28639647 - 28639692
Alignment:
| Q |
451 |
atttaaagtccttaatcagtgcttcgggagcactagttaacatttt |
496 |
Q |
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| T |
28639647 |
atttaaagtccttatccagtgccttgggagcactagttaacatttt |
28639692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 431646 - 431594
Alignment:
| Q |
450 |
catttaaagtccttaatcagtgcttcgggagcactagttaacattttccttat |
502 |
Q |
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| T |
431646 |
catttaaagtctttaaccaatgccccgggagcactagttaacatttcccttat |
431594 |
T |
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