View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_3 (Length: 1042)
Name: NF5654_2D_low_3
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 973; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 973; E-Value: 0
Query Start/End: Original strand, 1 - 1024
Target Start/End: Original strand, 40696455 - 40697490
Alignment:
| Q |
1 |
cttaaccactatctctgcccactctttatgcaatgcacttgctacaaaaacatcgcgaaccgctttaacatttgaagtgttcttggaataagcatcaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40696455 |
cttaaccactatctctgcccactctttatgcaatgcacttgctacaaaaacatcgcgaaccgctttaacatttgaagtgttcttggaataagcatcaagt |
40696554 |
T |
|
| Q |
101 |
tcatacacaccagatccattggaaaagtgatcagctaacttcagtggtgtttttggtgtcgagtatgacacattgttgacagtgtggaaagatacttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40696555 |
tcatacacaccagatccattggaaaagtgatcagctaacttcagtggtgtttttggtgtcgagtatgacacattgttgacagtgtggaaagatacttgat |
40696654 |
T |
|
| Q |
201 |
caatcgtcgcagttgatgcttctagaataaaagtctgagatattgttacatttgttacattgaatgttccttgtggattaggccttgcagctcctgctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40696655 |
caatcgtcgcagttgatgcttctagaataaaagtctgagatattgttacatttgttacattgaatgttccttgtggattaggccttgcagctcctgctgt |
40696754 |
T |
|
| Q |
301 |
tagattccaccttcaattgaaatagaaccatgatgtgaatatttgtaattttctatat----gatttgattaattgttcataactatggagaggcattgc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
40696755 |
tagattccaccttcaattgaaatagaaccatgatgtgaatatttgtaattttctatatatatgatttgattaattgttcataactatggagaggcattgc |
40696854 |
T |
|
| Q |
397 |
tattgctaacatcttaatataatgacattagataaacaaacagaaataggataccggagaacctcttcttttttagtatactaggcctgtttgtataaac |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40696855 |
tattgctaacatcttaatataatgacattagataaacaaacagaaataggataccggagaacctcttcttttttagtatactaggcccgtttgtataaac |
40696954 |
T |
|
| Q |
497 |
aacttaattaagcgcttatagcg---taattgtttaatcatataagtcctttttgtataagttacttttataacaaaaagataaaataagttgtttccat |
593 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40696955 |
aacttaattaagcgcttatagcggagtaattgtttaatcatataagtcctttttgtataagttacttttataacaaaaagataaaataagttgtttccat |
40697054 |
T |
|
| Q |
594 |
aaacccttcaatacagtcccgcaagtgcttatgtcagtgtataaatttaaacaagtcattccaaata-----gggtcttagcacaattatgtgacatgca |
688 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
40697055 |
aaacccttcgatacagtcccgcaagtgcttatgtcagtgtataaatttaaacaagtcattccaaataatataggctcttagcacaattatgtgacatgca |
40697154 |
T |
|
| Q |
689 |
atttacctaatggatttagcttggttgatggagaattccaaatcaaatggatctggaccaattgggagaggtccattagcctgtgttgtggaattatcat |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40697155 |
atttacctaatggatttagcttggttgatggagaattccaaatcaaatggatctggaccaattgggagaggtccattagcctgtgttgtggaattatcat |
40697254 |
T |
|
| Q |
789 |
aatgaagcacagcaatgccaacaagactgttgttaagactcattttaggagaagccactatgtaataatcagcaggattttgatttgctgtgacaagaac |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40697255 |
aatgaagcacagcaatgccaacaagactgttgttaagactcattttaggagaagccactatgtaataatcagcaggattttgatttgctgtgacaagaac |
40697354 |
T |
|
| Q |
889 |
tgaataggattggcctacatgaacatcaagagaatccaaatctatctgattcacataagatccttcagtttcaaccaaaagtaatttatggttttgaatc |
988 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40697355 |
tgaataggattggcctacatgaacatcaagagaatccaaatctatctgattcacataagatccttcagtttcaaccaaaagtaatttatggttttgaatc |
40697454 |
T |
|
| Q |
989 |
ctgaaattgaagctccaagctgtccctacatttgat |
1024 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40697455 |
ctgaaattgaagctccaagctgtccctacatttgat |
40697490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 484 - 518
Target Start/End: Original strand, 49175509 - 49175543
Alignment:
| Q |
484 |
tgtttgtataaacaacttaattaagcgcttatagc |
518 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49175509 |
tgtttgtataaacaacttaattaagcgattatagc |
49175543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 491 - 520
Target Start/End: Original strand, 33975480 - 33975509
Alignment:
| Q |
491 |
ataaacaacttaattaagcgcttatagcgt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
33975480 |
ataaacaacttaattaagcgcttatagcgt |
33975509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 486 - 571
Target Start/End: Complemental strand, 18704223 - 18704139
Alignment:
| Q |
486 |
tttgtataaacaacttaattaagcgcttatagcgtaattgtttaatcatataagtcctttttgtataagttacttttataacaaaa |
571 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||| ||| |||| |||||||||||| | || ||||||||||| || |||||||||| |
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|
| T |
18704223 |
tttggataaacaacttaattaagctcttgtagcataagtgttaaatcatataagttc-ttatgtataagttatttctataacaaaa |
18704139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 22573484 - 22573531
Alignment:
| Q |
482 |
cctgtttgtataaacaacttaattaagcgcttatagcgtaattgttta |
529 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
22573484 |
cctgtttctattaacaacttaattaagcgcttatagcataaatgttta |
22573531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 484 - 518
Target Start/End: Complemental strand, 39257575 - 39257541
Alignment:
| Q |
484 |
tgtttgtataaacaacttaattaagcgcttatagc |
518 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
39257575 |
tgtttggataaacaacttaattaagcgcttatagc |
39257541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 26516180 - 26516213
Alignment:
| Q |
485 |
gtttgtataaacaacttaattaagcgcttatagc |
518 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
26516180 |
gtttggataaacaacttaattaagcgcttatagc |
26516213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 483 - 522
Target Start/End: Original strand, 31828912 - 31828951
Alignment:
| Q |
483 |
ctgtttgtataaacaacttaattaagcgcttatagcgtaa |
522 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31828912 |
ctgtttctataaacaacttaattaagcgcttatagcgtaa |
31828951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 484 - 518
Target Start/End: Complemental strand, 3181260 - 3181226
Alignment:
| Q |
484 |
tgtttgtataaacaacttaattaagcgcttatagc |
518 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
3181260 |
tgtttgaataaacaacttaattaagcgcttatagc |
3181226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 491 - 521
Target Start/End: Original strand, 32917111 - 32917141
Alignment:
| Q |
491 |
ataaacaacttaattaagcgcttatagcgta |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32917111 |
ataaacaacttaattaagcgcttatagcgta |
32917141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 23785133 - 23785187
Alignment:
| Q |
483 |
ctgtttgtataaacaacttaattaagcgcttatagcgtaattgtttaatcatataa |
538 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| ||||| ||||||||| |
|
|
| T |
23785133 |
ctgtttgcataaacaacttaattaagtgcttatagcataaatgttt-atcatataa |
23785187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 49772861 - 49772827
Alignment:
| Q |
482 |
cctgtttgtataaacaacttaattaagcgcttata |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
49772861 |
cctgtttgaataaacaacttaattaagcgcttata |
49772827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 52324066 - 52324021
Alignment:
| Q |
484 |
tgtttgtataaacaacttaattaagcgcttatagcgtaattgttta |
529 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||| |||||| |
|
|
| T |
52324066 |
tgtttgtataaataacttaattaagtgcttatagcataagtgttta |
52324021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 521
Target Start/End: Complemental strand, 34055323 - 34055284
Alignment:
| Q |
482 |
cctgtttgtataaacaacttaattaagcgcttatagcgta |
521 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
34055323 |
cctgtttgtaaaaacaacttaattaagtgcttatagcgta |
34055284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 14299631 - 14299586
Alignment:
| Q |
579 |
ataagttgtttccataaacccttcaatacagtcccgcaagtgctta |
624 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||| |||||||||| |
|
|
| T |
14299631 |
ataagttgtttccataaactcttccaaacagtccctcaagtgctta |
14299586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 517
Target Start/End: Complemental strand, 43208322 - 43208289
Alignment:
| Q |
484 |
tgtttgtataaacaacttaattaagcgcttatag |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
43208322 |
tgtttgtataaacaacttaattaagtgcttatag |
43208289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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