View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_30 (Length: 569)
Name: NF5654_2D_low_30
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 42918783 - 42918234
Alignment:
| Q |
20 |
cttcctacggaacattattgttgattcatatgacaaatgaactaattggaaagcagcatttgaacaataaagtaaggtaacaagactatacagatttctt |
119 |
Q |
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| T |
42918783 |
cttcctacggaacattattgttgattcatatgacaaatgaactaattggaaagcagcatttgaacaataaagtaaggtaacaagactatacagatttctt |
42918684 |
T |
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| Q |
120 |
cttacctccattgtaaacgatgacgcaaaaactggtgtttgagaatccaacattgggatgacctgatgaaccaagtaaaaattatagcaactgcaaagcg |
219 |
Q |
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| T |
42918683 |
cttacctccattgtaaacgatgacgcaaaaactggtgtttgagaatccaacattgggatgacctgatgaaccaagtaaaaattatagcaactgcaaagcg |
42918584 |
T |
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| Q |
220 |
tatataagtagatagcaaaacatataactttaataaaagaataataatcaattagattgaatgcaatagaagaaacagagtatttgaaaacatacatgaa |
319 |
Q |
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| T |
42918583 |
tatataagtagatagcaaaacatataactttaataaaagaataataatcaattagattgaatgcaatagaagaaacagagtatttgaaaacatacatgaa |
42918484 |
T |
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| Q |
320 |
gagaaaactactttttcctgatattataaactgattaaattctgagataagtaaaaatactaaggactgaagcaatgtgattcacaaaagatttatatgt |
419 |
Q |
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| T |
42918483 |
gagaaaactactttttcctgatattataaactgattaaattctgagataaataaaaatactaaggactgaagcaatgtgattcacaaaagatttatatgt |
42918384 |
T |
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| Q |
420 |
atggttgttttgagtttctcttggtcttacaaggcttaccccacactttttgggtgtaagacagaaggactgcagctttagcttagtaagcgaaacattt |
519 |
Q |
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| T |
42918383 |
atggttgttttgagtttctcttggtcttacaaggcttaccccacactttttgggtgtaagacagaaagactgcagcttcagcttagtaagcgaaacattt |
42918284 |
T |
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| Q |
520 |
taaaaatatcataccttaccaagaaaggacagcaggcacatgtagcagaa |
569 |
Q |
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| T |
42918283 |
taaaaatatcataccttaccaagaaaggacagcaggcacatgtagcagaa |
42918234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 33964410 - 33964480
Alignment:
| Q |
122 |
tacctccattgtaaacgatgacgcaaaaactggtgtttgagaatccaacattgggatgacctgatgaacca |
192 |
Q |
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| T |
33964410 |
tacctccattgtaaaggaagatgcaaaaattggtgtattggaatccaatgctgggatgacctgatgaacca |
33964480 |
T |
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