View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_31 (Length: 533)
Name: NF5654_2D_low_31
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_31 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 60 - 514
Target Start/End: Original strand, 44949080 - 44949534
Alignment:
| Q |
60 |
tcattcagtagtaatcaactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattc |
159 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44949080 |
tcattcagtagtaatcaactcattcagaaatccaaccatttctgataatagacacatgctcctggagagacaacgccatcgggtgaacaaaagctcattc |
44949179 |
T |
|
| Q |
160 |
gctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactgg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949180 |
gctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactgg |
44949279 |
T |
|
| Q |
260 |
aataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgact |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949280 |
aataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgact |
44949379 |
T |
|
| Q |
360 |
tcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagag |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949380 |
tcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagag |
44949479 |
T |
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| Q |
460 |
catctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgat |
514 |
Q |
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| T |
44949480 |
catctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgat |
44949534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 87 - 511
Target Start/End: Original strand, 6469968 - 6470380
Alignment:
| Q |
87 |
aaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaacatggaaaggaag |
186 |
Q |
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|||||||||||||||||| |||| ||||||| | || ||||||||| ||||| | ||||||||||||||| || | |||||||||||||||||||| || |
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| T |
6469968 |
aaatccaaccatttctgaaaatacacacatgttgttggagagacaacaccatccgatgaacaaaagctcatccgttgacaagaaaaacatggaaagggag |
6470067 |
T |
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| Q |
187 |
taaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagc |
286 |
Q |
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| T |
6470068 |
tcgagtcagcagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacaggaatagatgcaaaatccccatatccagt |
6470155 |
T |
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| Q |
287 |
acttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctcttttta |
386 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| |||||| | ||| ||||| |
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| T |
6470156 |
acttgtcatctgcattatctcatcatctaaaaccaaagtttgtaaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactcctttta |
6470255 |
T |
|
| Q |
387 |
atccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcc |
486 |
Q |
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| T |
6470256 |
acccactccaaacatccatcacatgtggaaactctctccaatgaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcc |
6470355 |
T |
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| Q |
487 |
catcactataaaaatgcccaccagt |
511 |
Q |
| |
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| T |
6470356 |
cttcactgtaaaaatgcccaccagt |
6470380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 302 - 503
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
302 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
402 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
501 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
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| Q |
502 |
gc |
503 |
Q |
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|| |
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| T |
44943733 |
gc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 76 - 511
Target Start/End: Complemental strand, 419727 - 419304
Alignment:
| Q |
76 |
aactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaaca |
175 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||| | || ||||||||| || || | ||||||||||||||| || | |||||||||||| |
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| T |
419727 |
aactcattcaaaaatccaaccatttctgataatagacacatgttgttggagagacaacaccgtctgttgaacaaaagctcatccgttgacaagaaaaaca |
419628 |
T |
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| Q |
176 |
tggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatcc |
275 |
Q |
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|||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
419627 |
tggaaagggagtcgagtcaacagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacgggaatagatgcaaaatcc |
419540 |
T |
|
| Q |
276 |
ccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagattt |
375 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||| |||||| |
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| T |
419539 |
ccatatccagtacttgtcatctgcatgatctcatcgtctaaaaccaaagtttgcaaaatctcttctatttggtctcccgtgacttgagttgtgaagaccc |
419440 |
T |
|
| Q |
376 |
cgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccat |
475 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||||||||||||| || | |
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| T |
419439 |
cactctttttaacccactccaaacatccatcacatgtggaaactctctgtaatgaaatgcattgcaagcacgttttctttagagcatctataaaaaccgt |
419340 |
T |
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| Q |
476 |
atcaagcttcccatcactataaaaatgcccaccagt |
511 |
Q |
| |
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|||||| |||| || || ||||||||||||||||| |
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| T |
419339 |
atcaagactcccttcgctgtaaaaatgcccaccagt |
419304 |
T |
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