View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_36 (Length: 526)
Name: NF5654_2D_low_36
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 102 - 354
Target Start/End: Complemental strand, 46823841 - 46823589
Alignment:
| Q |
102 |
agttattaaaatggttttaaatttcatatatcatatggtttcctactttcctacccaaaagaatggatattttcaattagtgaaatggtggatttttaaa |
201 |
Q |
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| T |
46823841 |
agttattaaaatggttttaaatttcatatatcatatggtttcctactttcctacccaaaagaatggatattttcaattagtgaaatagaggaattttaaa |
46823742 |
T |
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| Q |
202 |
aagcacttaggcaagcagagatattcgatcatatgtcagcttcaaaataattggtaattggtttcctagacaatgttaagctggaaattgcatagaaaaa |
301 |
Q |
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| T |
46823741 |
aagcacttaggcaagcagagatattcgatcatatgtcagcttcaaaataattggtaattggtttcctagacaatgttaagctggaaattgcatagaaaaa |
46823642 |
T |
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| Q |
302 |
tatctcaaaagagatacatgagggatgacannnnnnngctaatcattttaagc |
354 |
Q |
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| T |
46823641 |
tatctcaaaagagatacatgagggatgacatttttttgctaatcattttaagc |
46823589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 46823913 - 46823873
Alignment:
| Q |
30 |
gcgtatcagcttctgttcatggggtccatacacaactacta |
70 |
Q |
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| T |
46823913 |
gcgtatcagcttctgttcatggggtccatacacaactacta |
46823873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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