View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_38 (Length: 522)
Name: NF5654_2D_low_38
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 51714895 - 51714460
Alignment:
| Q |
1 |
gtctatggtcatttcaccaaagattgttgctactccattcaatactaactagccactctgatgagtcatacccacatgatgcaccactctcatctaatag |
100 |
Q |
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| T |
51714895 |
gtctatggtcatttcaccaaagattgttgctgctccattcaatactaactagccactctgatgagtcatacccacatgatgcaccactgtcatctaatag |
51714796 |
T |
|
| Q |
101 |
aataatcactgatcgcgtgaaaagccagtatgaggatactagacattattggatgcaaattatttgaaataaatgtgactgctgcaatgcaacaactaat |
200 |
Q |
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| T |
51714795 |
aataatcactgatcgcgtgaaaagccagtatgaggatactagacattattggatgcaaattatttgaaataaatgtgactgctgcaatgcaacaactaat |
51714696 |
T |
|
| Q |
201 |
actcaaagattgttgttattacgattttggttagtgtcagactctagcgtcaacctaacttctgctcagatatcataaataacccatggtttagagcgtg |
300 |
Q |
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| T |
51714695 |
actcaaagattgttgttattgcgattttggttagtgtcagactccagcgtcaacctaacttctgctcagatatcataaataacccatggtttagagcgtg |
51714596 |
T |
|
| Q |
301 |
aaatatagaatattgagtgccacctcaacttgtgtaacatatacattcattgcatttcaataacactgtttggggtactcagcgttgagtatgctctatg |
400 |
Q |
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| T |
51714595 |
aaatatagaatattgagtgccacctcaacttgtgtaacatatacattcattgca-ttcaataacactgtttggggtactcagcgttgagtatgctctatg |
51714497 |
T |
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| Q |
401 |
atcaagtgctcatgtacttatcttagttaaaacttga |
437 |
Q |
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| T |
51714496 |
atcaagtgctcatgtacttatctaagttaaaacttga |
51714460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 51714955 - 51715024
Alignment:
| Q |
431 |
aacttgatatagttcatttaactattacagacaccactctaaaattttgctgtcgatggttatgtgccgaa |
501 |
Q |
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| T |
51714955 |
aacttgatatagttcatttaactattacagacaccactc-aaaattttgctgtcgatggttatgtgccgaa |
51715024 |
T |
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