View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_40 (Length: 519)
Name: NF5654_2D_low_40
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 40515470 - 40514985
Alignment:
| Q |
18 |
aatataaattcaagtcatagctacaatacaatcatcaacacatgcatgtgtgttgtatagtcatagttatnnnnnnnn-ttgaagacacaacttctactc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40515470 |
aatataaattcaagtcatagctacaatacaatcatcaacacatgcatgtgtgttgtatagtcatagttataaaaaaaaattgaagacacaacttctactc |
40515371 |
T |
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| Q |
117 |
tgagaagctgcaaatttagttttagctgccaatcaaatatcccaaaacaatgagtgcaatttgcaacatactgaatgtagtattgcctccattgtcactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40515370 |
tgagaagctgcaaatttagttttagctgccaatcaaatatcctaaaacaatgagtgcaatttgcaacatactgaatgtagtattgcccccattgtcactg |
40515271 |
T |
|
| Q |
217 |
atttcgatccctatcaccatgctaccttatcttttcgttaaattgcttatttatgcaaaaaacttggtgcacacagaaagcatggaaagaaaagtagtac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515270 |
atttcgatccctatcaccatgctaccttatcttttcgttaaattgcttgtttatgcaaaaaacttggtgcacacagaaagcatggaaagaaaagtagtac |
40515171 |
T |
|
| Q |
317 |
taatcactggggcagcctcaggaattggcgaggtacccaacttactccgttaatatttttgttttggtgaattatctcatacctgagaaaaatgtggata |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515170 |
taatcactggggcagcctcaggaattggcgaggtacccaacttactccgttaata-ttttgttttggtgaattatctcatacctgagaaaaatgtggata |
40515072 |
T |
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| Q |
417 |
atagtttcaataatgcaaaattagcttaaaataatttcaattcatttaaaaaccagtcgcaatagttggttcccttgcagggccgac |
503 |
Q |
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| T |
40515071 |
atagtttcaataatgcaaaattagcttaaaataatttcaattcatttaaaaaccagtcgcaatagttggttcccttgcagggccgac |
40514985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 156 - 318
Target Start/End: Complemental strand, 40528412 - 40528250
Alignment:
| Q |
156 |
tcccaaaacaatgagtgcaatttgcaacatactgaatgtagtattgcctccattgtcactgatttcgatccctatcaccatgctaccttatcttttcgtt |
255 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||| | ||||||||| |||||||||||| ||||| | |
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| T |
40528412 |
tcccaaaacaatgagtattatttgcaacattctgaatgtagcattgcccccattgtcactgattctgctccctatcatcatgctaccttacattttcttc |
40528313 |
T |
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| Q |
256 |
aaattgcttatttatgcaaaaaacttggtgcacacagaaagcatggaaagaaaagtagtacta |
318 |
Q |
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||||||||||||||| ||||| ||||||| ||||||| |||| ||||||||| |||||| |
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| T |
40528312 |
aaattgcttatttatataaaaaggttggtgcgaacagaaaatatggcaagaaaagttgtacta |
40528250 |
T |
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