View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_42 (Length: 501)
Name: NF5654_2D_low_42
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 7917021 - 7916536
Alignment:
| Q |
1 |
tacaatgagatggacatcatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctacaaatctatatatcttaattgatttg |
100 |
Q |
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|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7917021 |
tacaatgaattggaaatgatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctaaaaatctatatatcttaattgatttg |
7916922 |
T |
|
| Q |
101 |
actattaatttatctttatttatgagttaaatatggctttaacactttgacatgactttaatatttggacatgtaatttaacagattgaaagtaccctac |
200 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
7916921 |
actattaatttatcattattcatgagttaaatatggctttaacactttgacatgactttaatatttggacatgtaatgtaacagattgaaagcaccctac |
7916822 |
T |
|
| Q |
201 |
aacatcttcgcaacggtggttctattaggagtgaggtaaattaattacagtcaaatttggcattttcttataactaaattctttttatgatatcattact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7916821 |
aacatcttcgcaacggtggttctattaggagtgaggtaaattaattacagtcaaatttggcattttcttataacgaaattctttttatgatatcattact |
7916722 |
T |
|
| Q |
301 |
tttgccaagtacttttgaacacacgtatttctattatatcagattttaa-aaaattcatgtacttttacttttctgtattttgcaaatatatatgttaca |
399 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916721 |
ttttccaagtacttttgaacacacgtatttctattatatcagattttaaaaaaattcatgtacttttacttttctgtattttgcaaatatatatgttaca |
7916622 |
T |
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| Q |
400 |
caggatatgatgatacttgattttttggtcacgataaatccgctaattgattcagatgattggttgaacgaggtaaacgttatgta |
485 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916621 |
caggatatgatgatacttgattttttggtcaccataaatccgctaattgattcagatgattggttgaacgaggtaaacgttatgta |
7916536 |
T |
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