View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_43 (Length: 498)
Name: NF5654_2D_low_43
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 5257614 - 5257933
Alignment:
| Q |
5 |
gcagagatacatataaattacatttgatttcaaggttaaaaatgtttagtcccaaaaaatttcacaaattttcaagtttagtccctgcattaatcttgtc |
104 |
Q |
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| T |
5257614 |
gcagagatacttataaattacaattgatttcaaggttaaaaatgtttagtcccaaaaaatttcacaaa-------gtttagtccctgcattaatcttgtc |
5257706 |
T |
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| Q |
105 |
cctataaacttgtgatctgagttagacacatagaaattacagaaatcgcaatattaatatcacattcctattttttgtcacaattttgtcttctcattgc |
204 |
Q |
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| T |
5257707 |
cctattaacttgtgatctgagttagacacatagaaattacagaaatcgcaatattaatatcacattcctattttt------------gtcttctcattgc |
5257794 |
T |
|
| Q |
205 |
acctaccgatctcacttgtgctgattcagctgttatggataggtttaccatatcagtttgcatgggttctcaatactagtgtgttacatttggaagcata |
304 |
Q |
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| T |
5257795 |
acctaccgatctca--------------gctgttttggataggtttaccatatcagtttgcatgggttctcaatactagtgtgttacatttggaagcata |
5257880 |
T |
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| Q |
305 |
aagaaatactttcattgtgtaccttactgaaggttctccaacaatcatgcttg |
357 |
Q |
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| T |
5257881 |
aagaaatactttcattgtgtaccttactgaaggttctccaacaatcacgcttg |
5257933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 36 - 280
Target Start/End: Original strand, 5277451 - 5277698
Alignment:
| Q |
36 |
aaggttaaaaatgtttagtcccaaaaaatttcacaaattttcaagtttagtccctgcattaatcttgtccctataaacttgtgatctgagttagacacat |
135 |
Q |
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| T |
5277451 |
aaggttaaatatgtttagtccctaaaaagttcagag-ttttcaagtttagtccctacattaatcttgtccctataaacttgtgatctgagttagatacac |
5277549 |
T |
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| Q |
136 |
agaaattacagaaatcgcaatattaatatcacattcctattttttgtcacaattttgtcttctcattgcacctaccgatctcacttgtgct----gattc |
231 |
Q |
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| T |
5277550 |
agaaattacagaaattgcaatattaatatcacattcctattttttgtcacaattttgtcttctcattgcacctaccgatctcacttgtactgtacgattc |
5277649 |
T |
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| Q |
232 |
agctgttatggataggtttaccatatcagtttgcatgggttctcaatac |
280 |
Q |
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| T |
5277650 |
agctgttttggataggtttaccatatcagtttgcatggtttctcaatac |
5277698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 379 - 498
Target Start/End: Original strand, 5261072 - 5261191
Alignment:
| Q |
379 |
gaatagtgatttcaacgagtaaaaataaagttcttatataaagagatggaacgaataaaattttaaaaagaaagtcgtgaaatggttttgaataatttgt |
478 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5261072 |
gaataatgatttcaacgagtaaaaataaagttcttatataaagagatagaacgaataaaattttaaaaagaaagtcgtgaaatggttttgaataatttgt |
5261171 |
T |
|
| Q |
479 |
gctaatgtgacacagaaatc |
498 |
Q |
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| T |
5261172 |
gctaatgtgacacagaaatc |
5261191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 365 - 498
Target Start/End: Original strand, 5277820 - 5277953
Alignment:
| Q |
365 |
gaaaatacttgagagaatagtgatttcaacgagtaaaaataaagttcttatataaagagatggaacgaataaaattttaaaaagaaagtcgtgaaatggt |
464 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
5277820 |
gaaaatacttgagagaataatgatttcaacggttaaaaataaagttcttatataagtagatagaacgaataaaattttaaaaagaaagtcatgaaatggt |
5277919 |
T |
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| Q |
465 |
tttgaataatttgtgctaatgtgacacagaaatc |
498 |
Q |
| |
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| T |
5277920 |
ttagaataatctgtgctaatgtgacactgaaatc |
5277953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 5277706 - 5277746
Alignment:
| Q |
317 |
cattgtgtaccttactgaaggttctccaacaatcatgcttg |
357 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
5277706 |
cattgtgtaccttactgaaggttctctaacaatcatgcttg |
5277746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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