View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_45 (Length: 496)
Name: NF5654_2D_low_45
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 27 - 477
Target Start/End: Original strand, 44144712 - 44145166
Alignment:
| Q |
27 |
agataatactgaacctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaatnnnnnnn |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144712 |
agataatactgaatctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaaaaaa |
44144811 |
T |
|
| Q |
127 |
nnn----tcgtaaataaacaaatataatatcaggtgttttattgtcaaaaattgcaatcaaatttagactcacttgcaagtttcgaataggaggattatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144812 |
aaaaaaatcgtaaataaacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattatt |
44144911 |
T |
|
| Q |
223 |
ttaatctttttaacatgtaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccattttaaaaccaaagtc |
322 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
44144912 |
ttaatttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtc |
44145011 |
T |
|
| Q |
323 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145012 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
44145111 |
T |
|
| Q |
423 |
gcgtccgagtcaatgatcaaattgtggaaatcttgcatctgaacccgttgcaaac |
477 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44145112 |
gcgtctgagtcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaac |
44145166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 40893332 - 40893439
Alignment:
| Q |
241 |
aaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccatttta----aaaccaaagtcctagaattcatgtg |
336 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||| ||||| ||||||| |||||||||| ||| ||||| | | | | ||||||||||||||||||| |
|
|
| T |
40893332 |
aaacaagactttcattagagccatat--agtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcatgtg |
40893429 |
T |
|
| Q |
337 |
ctgcagtatt |
346 |
Q |
| |
|
|||||||||| |
|
|
| T |
40893430 |
ctgcagtatt |
40893439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University