View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_48 (Length: 495)
Name: NF5654_2D_low_48
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 33051989 - 33051601
Alignment:
| Q |
18 |
atgaatgctactacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggaataatatttggtataaagtgtgca |
117 |
Q |
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| T |
33051989 |
atgaatgctactacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggattaatattttgtataaagtgtgca |
33051890 |
T |
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| Q |
118 |
aataacttggagtttttatggttacccccaagagatttagaaactttgtttctggt-aattaactagactagccaggacgaaacaaaaaggggtgaaggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051889 |
aataacttggagtttttatggttacccccaagagatttagaaactttgtttctggtaaattaactagactagccaggacgaaacaaaaaggggtgaaggt |
33051790 |
T |
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| Q |
217 |
tctagacttaatttgacaatcaatgatttaggaaatttgagccacnnnnnnnttaaagagttctttcagactcggtcatgaaggttcctagcatgattga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051789 |
tctagacttaatttgacaatcaatgatttaggaaatttgagccacaaaaaaattgaagagttctttcagactcggtcatgaaggttcctagcatgattga |
33051690 |
T |
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| Q |
317 |
acttattaaaacagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataactggtgtgttaatctggactcgaggg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33051689 |
acttattaaaacagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataagtggtgtgttaatctggactcgaggg |
33051601 |
T |
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