View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_49 (Length: 483)
Name: NF5654_2D_low_49
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 17656317 - 17656772
Alignment:
| Q |
1 |
tttgcaaaacattgggtaccattttgtaaaaagtacaatgtgcaaattagggctccttttagatatttttgtgatgacaacgattgcacgaccaatgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17656317 |
tttgcaaaacattgggtaccattttgtaaaaagtacaatgtacaaattagggctccttttagatatttttgtgatgacaacgattgcacgaccaatgatg |
17656416 |
T |
|
| Q |
101 |
aagaattcagacaagaatggttacagatgaaggtacgtaacaagttttacttttttatataggaaaggtaagtaacatgttgttgccagtgataataata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17656417 |
aagaattcagacaagaatggttacagatgaaggtacgtaacaagttttatttttttatataggaaaggtaagtaacatgttgttgccggtgataataata |
17656516 |
T |
|
| Q |
201 |
atgcaatgttgattctgttgacaagataaagatttgtctgaccacaaaatgttaaacggtttttgtttctcttatgttgacaggatttgtatgaaaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17656517 |
atgcaatgttgattctgttgacaagataaagatttgtctgaccacaaaatgttaaacggtttttgtttctcttatgttgacaggatttgtatgaaaatct |
17656616 |
T |
|
| Q |
301 |
tagccataaaatagatgtggacccaaaatctattccaagcttacttgaagaagagtttgcagttttctcaaatactaaccggacaaatcatccagccata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17656617 |
tagccataaaatagatgtggacccaaaatctattccaagcttacttgaagaagagtttgcagttttctcaaatactaaccggacaaatcatccagccata |
17656716 |
T |
|
| Q |
401 |
atcaaggtattgtttgtggaccgggctcccggcagtcggcaaccacacacattcac |
456 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17656717 |
atcaaggtattgtttttggaccgggctcccggcagtcggcaaccacacatattcac |
17656772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 37011663 - 37011598
Alignment:
| Q |
12 |
ttgggtaccattttgtaaaaagtacaatgtgcaaattagggctccttttagatatttttgtgatga |
77 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||| || || ||||||||||| |||||||| |
|
|
| T |
37011663 |
ttgggtaccattttgtaagaagtacaatgtacaatgtagagcaccatttagatatttctgtgatga |
37011598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 37027753 - 37027688
Alignment:
| Q |
12 |
ttgggtaccattttgtaaaaagtacaatgtgcaaattagggctccttttagatatttttgtgatga |
77 |
Q |
| |
|
||||||||| |||||||| || |||||||||||| |||| || |||||||| || ||||||||||| |
|
|
| T |
37027753 |
ttgggtacctttttgtaagaaatacaatgtgcaagttagagcaccttttaggtacttttgtgatga |
37027688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University