View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_51 (Length: 481)
Name: NF5654_2D_low_51
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 115 - 462
Target Start/End: Complemental strand, 22756863 - 22756522
Alignment:
| Q |
115 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaacatgaggaccagcacaagccttccataactgttcatagagt |
214 |
Q |
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| T |
22756863 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaacatgaggaccagcacaagccttccataactgttcatagagt |
22756764 |
T |
|
| Q |
215 |
tcatcttcttcaccattattcatcatcattgcaagtcaaaaaccttttcactttttcaccactttgatcaaatataactcatcattactattactatata |
314 |
Q |
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| T |
22756763 |
tcatcttcttcaccattattcatcatcattgcaagtcaaaaaccttttcactttttcaccactttgatcaaatataactcatcattactattactatata |
22756664 |
T |
|
| Q |
315 |
gtacttaannnnnnnnnnnnnnnnnngtactggcttcacaattgaaagatgaatgattaagctttatgagagacaatataaacagcttttgaaatcatgt |
414 |
Q |
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| T |
22756663 |
gtacttaa------catcatcatcatgtactggtttcacaattgaatgatgaatgattaagctttatgagagacaatataagctgcttttgaaatcatgt |
22756570 |
T |
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| Q |
415 |
ctgttatgaaagctgctgcaaacgttacagaacctttcagacagaaac |
462 |
Q |
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| T |
22756569 |
ctgttatgaaagctgctgcaaacgttacagaacctttcagacagaaac |
22756522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22756984 - 22756928
Alignment:
| Q |
1 |
ccttaaccaaaacaaaaaat-agaatcaagcatatatccaaattccaagcatcttaa |
56 |
Q |
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| T |
22756984 |
ccttaaccaaaacaaaaaattagaatcaagcatatatccaaattcccagcatcttaa |
22756928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 7077583 - 7077642
Alignment:
| Q |
115 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaac |
174 |
Q |
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|||||||||||||||||| || ||||||||||| ||||| ||| ||| |||||| ||||| |
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| T |
7077583 |
ttgttccatgtgtccttgtgggaaatagaaaacactttgaccaacacaaggaacatcaac |
7077642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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