View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_low_52 (Length: 479)

Name: NF5654_2D_low_52
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_low_52
NF5654_2D_low_52
[»] chr1 (1 HSPs)
chr1 (6-292)||(26247111-26247393)
[»] chr6 (3 HSPs)
chr6 (103-246)||(16389281-16389424)
chr6 (146-269)||(33623913-33624036)
chr6 (96-218)||(17178984-17179106)
[»] chr4 (2 HSPs)
chr4 (103-246)||(10129696-10129839)
chr4 (185-269)||(15831738-15831822)
[»] chr3 (1 HSPs)
chr3 (103-246)||(30911677-30911820)
[»] chr5 (3 HSPs)
chr5 (95-205)||(8715859-8715969)
chr5 (185-253)||(22431289-22431357)
chr5 (223-271)||(8716158-8716206)
[»] chr8 (1 HSPs)
chr8 (101-166)||(32519741-32519806)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 292
Target Start/End: Original strand, 26247111 - 26247393
Alignment:
Q  6 gtcgactgatatgaacaaggatatgggctccaatgaattagggttaaagatcgggtccaatgagttaggtagggaggtccacatgaattatcattaaaag 105  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||    |||  |||||| |||||||||||||||    
T  26247111 gtcgagtgatatgaacaaggatatgggctgcaatgaattagggtcaaagatcgagtccaatgagttagg----gagaaccacataaattatcattaaaag 26247206  T
Q  106 tggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataatattgcctatata 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  26247207 tggagtgactatgttgctattaagtggtgattcattagtgctagaagattgatgactcactagcttgttaggaagaacatagaataatattaactatata 26247306  T
Q  206 aaatattgtactccctcttttagaatcatcaatgaaattaagtctatttcccttctcttcaattctcaggagatttttctccggcct 292  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  26247307 agatattgtactccctcttttagaatcatcaatgaaattaaatctatttcccttctcttcaattctcaggagattttcctccggcct 26247393  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 16389424 - 16389281
Alignment:
Q  103 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataatattgcctat 202  Q
    ||||||| |||||||||||| ||| |||  ||| |||||||| ||||||||||| |||||||||   ||||||||||| |  ||||||||  ||||||||    
T  16389424 aagtggaatgactatgttgccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaaggatctagaataactttgcctat 16389325  T
Q  203 ataaaatattgtactccctcttttagaatcatcaatgaaattaa 246  Q
    |||| || ||||| | |||||  || ||||||||||||||||||    
T  16389324 ataatatcttgtatttcctctgatacaatcatcaatgaaattaa 16389281  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 33624036 - 33623913
Alignment:
Q  146 ctagaagattgatgactcactgacttgttaggaagaacatagaataatattgcctatataaaatattgtactccctcttttagaatcatcaatgaaatta 245  Q
    ||||| |||||||||||||||   ||||||||||| |  || |||||||||   ||||||| || || ||||  |||||||| |||||||||||||||||    
T  33624036 ctagaggattgatgactcactagtttgttaggaaggatctaaaataatattttttatataagatcttttactttctcttttataatcatcaatgaaatta 33623937  T
Q  246 agtctatttcccttctcttcaatt 269  Q
    |||||| |||| ||||||||||||    
T  33623936 agtctaattcctttctcttcaatt 33623913  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 17178984 - 17179106
Alignment:
Q  96 tcattaaaagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataatat 195  Q
    |||| ||||||||||||| | ||||  |||||| || ||  |||||||| ||| ||  |||||||||||||   |||||||||||||  |||||||||||    
T  17178984 tcatcaaaagtggagtgattgtgttattattaaatggtgcctcattagttctaaaacgttgatgactcactagtttgttaggaagaatttagaataatat 17179083  T
Q  196 tgcctatataaaatattgtactc 218  Q
    ||| || |||| || ||||||||    
T  17179084 tgcatacataagatcttgtactc 17179106  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 10129839 - 10129696
Alignment:
Q  103 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataatattgcctat 202  Q
    ||||||| |||||||||| | ||| |||  ||| |||||||| ||||||||||| |||||||||   ||||||||||| |  ||||||||  ||||||||    
T  10129839 aagtggaatgactatgttaccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaaggatctagaataactttgcctat 10129740  T
Q  203 ataaaatattgtactccctcttttagaatcatcaatgaaattaa 246  Q
    |||| || ||||| | ||||| ||| ||||||||||||||||||    
T  10129739 ataatatcttgtatttcctctattacaatcatcaatgaaattaa 10129696  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 15831738 - 15831822
Alignment:
Q  185 tagaataatattgcctatataaaatattgtactccctcttttagaatcatcaatgaaattaagtctatttcccttctcttcaatt 269  Q
    ||||||||  |||||||||||| || | |||||  |||| ||  |||||||||| ||||||||||||| ||||||||||| ||||    
T  15831738 tagaataactttgcctatataagatctcgtactttctctatttcaatcatcaataaaattaagtctatctcccttctctttaatt 15831822  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 30911820 - 30911677
Alignment:
Q  103 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataatattgcctat 202  Q
    ||||||| |||||||||||| ||| |||  ||| |||||||| ||||||||||| |||||||||   ||||||||||| |  ||||||||  |||| |||    
T  30911820 aagtggaatgactatgttgccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaaggatctagaataactttgcatat 30911721  T
Q  203 ataaaatattgtactccctcttttagaatcatcaatgaaattaa 246  Q
    |||| || ||||| | ||||| ||| ||||||||||||||||||    
T  30911720 ataatatcttgtatttcctctattacaatcatcaatgaaattaa 30911677  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 8715859 - 8715969
Alignment:
Q  95 atcattaaaagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataata 194  Q
    ||||||||||||||||||| ||| |||||||||||||  || | |||| | ||||||||||| ||||||  ||  ||||| |||||||  ||||||||||    
T  8715859 atcattaaaagtggagtgattatattgctattaagtggcgactaattaattctagaagattggtgactcgttggtttgtttggaagaatctagaataata 8715958  T
Q  195 ttgcctatata 205  Q
    ||| |||||||    
T  8715959 ttgtctatata 8715969  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 22431289 - 22431357
Alignment:
Q  185 tagaataatattgcctatataaaatattgtactccctcttttagaatcatcaatgaaattaagtctatt 253  Q
    ||||||||||||| |||||||| || |||||||| ||||| || |||||| ||||  ||||||||||||    
T  22431289 tagaataatattgtctatataagatcttgtactctctcttctataatcatgaatgtgattaagtctatt 22431357  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 8716158 - 8716206
Alignment:
Q  223 ttttagaatcatcaatgaaattaagtctatttcccttctcttcaattct 271  Q
    |||||||||| | ||||||||||| |||||||| |||||||| ||||||    
T  8716158 ttttagaatcgtaaatgaaattaaatctatttctcttctctttaattct 8716206  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 32519806 - 32519741
Alignment:
Q  101 aaaagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcact 166  Q
    |||||| || |||||||||||| ||| ||| |||| ||||| || ||||||||||| |||||||||    
T  32519806 aaaagttgaatgactatgttgccatttagtaatgactcattggttctagaagattggtgactcact 32519741  T

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