View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_53 (Length: 475)
Name: NF5654_2D_low_53
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 46 - 462
Target Start/End: Complemental strand, 41275595 - 41275171
Alignment:
| Q |
46 |
cgacttcctcaaagataagatcaatgagaaaaaatcttatataatcttcttttaaataaacgaaatgataataattattaaaactcacacataaatggaa |
145 |
Q |
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| T |
41275595 |
cgacttcctcaaagataagatcaatgagaaaaaaccttatataatcttcttttaaataaatgaaatgataataattattaaaactcacacataaatggaa |
41275496 |
T |
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| Q |
146 |
gagtcaaaatttgaatttcgatcacgg------tattcagactaacaattt-cagtatttttattatttaagttaggattttaacttatataatctattt |
238 |
Q |
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| T |
41275495 |
gagtcaaaatttaaatttcgatcactgaatagatattcagcctaacaattttcagtatttttattatttaagttagaattttgacttatataatctattt |
41275396 |
T |
|
| Q |
239 |
gatactactaatattgtgtcttttagacaaag-----tatcctaaggctgagtatgagatttttgtccacaaagaaaaggttgagtgtgtgattaatgtg |
333 |
Q |
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| T |
41275395 |
gatactactaatattgtgtcttttagacagagtagtatatcctaaggctgagtatgagatttttgtccacaaagaaaaggttgagtgtgtgattaatgtg |
41275296 |
T |
|
| Q |
334 |
aaatgatgtaggcttatgtgtgttggtaacgtgttatcctcctaattattataaaatttaaaaccagaacgccctggtgccgaccttgtaacaacggggt |
433 |
Q |
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| T |
41275295 |
aaatgatgtaggcttatgtgtgttggtaacgtgttatcctcctaattatt-ttaaatttaaaaccagaacaccctggtgccgaccttgtaacaacggggt |
41275197 |
T |
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| Q |
434 |
agtataaattactactatcttttgatgtc |
462 |
Q |
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| T |
41275196 |
agtataaat---tactatcttttgatgtc |
41275171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 3006901 - 3006956
Alignment:
| Q |
95 |
ttttaaataaacgaaatgataataattatt-aaaactcacacataaatggaagagt |
149 |
Q |
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| T |
3006901 |
tttttaatagacgaaatgacaataataattgaaaactcacacataaatggaagagt |
3006956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1889386 - 1889435
Alignment:
| Q |
1 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcgact |
50 |
Q |
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| T |
1889386 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcgact |
1889435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1897465 - 1897514
Alignment:
| Q |
1 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcgact |
50 |
Q |
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| T |
1897465 |
acaaggtgatatcaaactctcaacgcatacgtcacgcatgattttcgact |
1897514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1906911 - 1906960
Alignment:
| Q |
1 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcgact |
50 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1906911 |
acaaggtgatatcaaactctcaacgcatacgtcacgcatgattttcgact |
1906960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2932175 - 2932126
Alignment:
| Q |
1 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcgact |
50 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2932175 |
acaaggtgatatcaaactctcaacgcatacgtcacgcatgattttcgact |
2932126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1890852 - 1890898
Alignment:
| Q |
1 |
acaaggtgatatcaaactctcaacgcatacgtaacgcatgattttcg |
47 |
Q |
| |
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|||||| ||||||||||||||||||||||||| | |||||||||||| |
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| T |
1890852 |
acaaggcgatatcaaactctcaacgcatacgtcatgcatgattttcg |
1890898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 39132931 - 39132969
Alignment:
| Q |
181 |
ctaacaatttcagtatttttattatttaagttaggattt |
219 |
Q |
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| T |
39132931 |
ctaacaatttcagtatttttattaattaagttaagattt |
39132969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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