View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_low_61 (Length: 447)

Name: NF5654_2D_low_61
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_low_61
NF5654_2D_low_61
[»] chr2 (17 HSPs)
chr2 (1-293)||(10508805-10509097)
chr2 (7-254)||(10464606-10464853)
chr2 (1-242)||(10546752-10546993)
chr2 (7-243)||(10519481-10519717)
chr2 (7-245)||(10494203-10494441)
chr2 (310-429)||(10509090-10509205)
chr2 (7-247)||(10475884-10476124)
chr2 (1-162)||(10447848-10448009)
chr2 (9-153)||(10864127-10864271)
chr2 (127-246)||(7478921-7479040)
chr2 (40-162)||(10850314-10850436)
chr2 (7-205)||(27969050-27969248)
chr2 (7-205)||(28091339-28091537)
chr2 (7-205)||(28101571-28101769)
chr2 (298-330)||(15305601-15305633)
chr2 (126-205)||(28097674-28097753)
chr2 (299-331)||(4026762-4026794)
[»] chr7 (2 HSPs)
chr7 (7-151)||(1094395-1094539)
chr7 (298-330)||(45806420-45806452)
[»] chr5 (5 HSPs)
chr5 (1-90)||(33577954-33578043)
chr5 (1-90)||(33577404-33577493)
chr5 (297-331)||(35445998-35446032)
chr5 (298-331)||(12554407-12554440)
chr5 (298-330)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (297-331)||(17830097-17830131)
chr1 (297-327)||(37473342-37473372)
chr1 (299-332)||(29904704-29904737)
chr1 (295-327)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (297-331)||(1058167-1058201)
chr8 (298-330)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (297-331)||(8147645-8147679)
chr6 (298-330)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (297-331)||(31851397-31851431)
chr4 (299-331)||(42321972-42322004)
chr4 (298-330)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (297-327)||(20880420-20880450)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 10508805 - 10509097
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508805 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 10508904  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508905 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 10509004  T
Q  201 gaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaatgatgaagaataggcatgcttggataaacagcttatagca 293  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10509005 gaaatcaacacaagcaggtgtgtcaattacgctcatctgcaaggacagaaaaatgatgaagaataggcatgcttggataaacagcttatagca 10509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 10464606 - 10464853
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    ||||||||||||||||||||||||||| | || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10464606 aagtttacctgattcacaacttcccacggatttgctcccttctggtcaagattgttgatgaatacaagtcttggaagttgatatgttaccatttgcttat 10464705  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
      ||| ||||||| |||   |||||||||||||||| |  ||||||||  || ||| |||||||||||||||| ||||| | ||||||||||||||||||    
T  10464706 tgacaacaatggagtggctctgcaccccatcaacactatcaagaacaaatacagcaccgtcaaaggcacgcagcgcattctgaacctcaggagtgaaatc 10464805  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaat 254  Q
    ||||  |  |||||||||||||||  ||||||||||||||||||||||    
T  10464806 aacatgatcaggtgtgtcaattacagtcatctgcaaggacagacaaat 10464853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10546752 - 10546993
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    ||||||||||| |||||||| | ||| |||||| | |  |||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |||||    
T  10546752 aatctaaagttcacctgatttaaaacatcccacggatctgctcccttgttgtcaagattgttgatgtatacaagtcttggaagttgatattttatcattt 10546851  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagt 200  Q
    |||||||||||| ||||||| ||   | || |||| |||||| ||| ||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||    
T  10546852 gcttatcaacagaaatggacaggctgttcatcccaccaacactagacagaacaaaaacggcagcatcaaaggcacgtagagcattatcaacctcagaagt 10546951  T
Q  201 gaaatcaacacaagaaggtgtgtcaattacgctcatctgcaa 242  Q
    ||| |||||||||  |||||||||||||||||||||||||||    
T  10546952 gaagtcaacacaatcaggtgtgtcaattacgctcatctgcaa 10546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 10519481 - 10519717
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||| | ||||| |||| | || |||||||| ||||||||||  | || ||||||||||||||||||||||||||||| |||||||||||    
T  10519481 aagtttacctgatttaaaacttgccacggatttgctcccttttggtcaagatcattgacgaatacaagtcttggaagttgatatgttatcatttgcttat 10519580  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    | ||||||||||||||||| |||||||||||||| | ||||||||||||||| |||  ||||||||||| ||||||||| | ||| ||||  ||||||||    
T  10519581 ccacagcaatggactggtcctgcaccccatcaacgctagaaagaacaagaacagcactgtcaaaggcacccagagcattcttaacttcagaggtgaaatc 10519680  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaag 243  Q
    || ||||  || |||||| |||| |||||||||||||    
T  10519681 aaaacaattagttgtgtccattatgctcatctgcaag 10519717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 10494203 - 10494441
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  |||||||||||| | |  |||| ||| ||||||||||||| |||||| |||||||||||||||||| ||   | |||||||||||    
T  10494203 aagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttat 10494302  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    |||||| ||||||||||  || ||| ||| |||||| ||||||||||||||| ||| |||||||||||| ||||||||| | |||||||| |||||||||    
T  10494303 caacagaaatggactgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaaggcacacagagcattcttaacctcagtagtgaaatc 10494402  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaagga 245  Q
    ||||| || |||||||||||| ||| |||||||||||||    
T  10494403 aacacgagcaggtgtgtcaatcacggtcatctgcaagga 10494441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 10509090 - 10509205
Alignment:
Q  310 ttatagcaaatgataaaataaataaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 409  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509090 ttatagcaaatgataaaat----aaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 10509185  T
Q  410 atccatttacagtgagaatg 429  Q
    ||||||||||||||||||||    
T  10509186 atccatttacagtgagaatg 10509205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 10475884 - 10476124
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||| ||||  | || |||||||| ||||||||||||| ||| || |||||||||||||||| ||||   | |||||| ||||    
T  10475884 aagtttacctgatataaaactccccatggatttgctcccttatggtcaagattgttgataaaaacaagtcttggaagttcatatcccatcatttgtttat 10475983  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatc 206  Q
    |||||| |||||| |||   | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||| |||||||||    
T  10475984 caacagaaatggagtggctgttcaccccatcaacaccagaaagaacaagaatggcaccgtcaaaggcacgcagagcattctgaacctcagcagtgaaatc 10476083  T
Q  207 aacacaagaaggtgtgtcaattacgctcatctgcaaggaca 247  Q
    ||||  |  |||||||||||  || ||||||||||| ||||    
T  10476084 aacattatcaggtgtgtcaagcacactcatctgcaatgaca 10476124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 10447848 - 10448009
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccattt 100  Q
    |||||||| ||||||||||||| |||||||||  | || |||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||| |||||    
T  10447848 aatctaaattttacctgattcaaaacttcccatggatttgctcccttgtggtcaagattgttgataaatacaagtcttggaagtttataccttagcattt 10447947  T
Q  101 gcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggca 162  Q
    | | ||||| ||||||||| |||  |||||||||| |||||  | |||||||| ||| ||||    
T  10447948 gttcatcaatagcaatggagtggctttgcaccccaccaacaatacaaagaacatgaatggca 10448009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 10864127 - 10864271
Alignment:
Q  9 gtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttatca 108  Q
    |||||||||||| | ||||| |||  | || ||||||||||||||||| ||||  || |||| ||||||||||||||| ||| ||| ||||| |||||||    
T  10864127 gtttacctgatttaaaacttgccatggatttgctcccttgtggtcaaggttgtttataaatataagtcttggaagttggtatcttatcatttccttatca 10864226  T
Q  109 acagcaatggactggtcttgcaccccatcaacaccagaaagaaca 153  Q
    ||||||||||| |||  |||||||||||  |||||| ||||||||    
T  10864227 acagcaatggagtggctttgcaccccattgacaccacaaagaaca 10864271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 7479040 - 7478921
Alignment:
Q  127 tgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaa 226  Q
    |||||||||||||||| ||||||| ||||||| ||| | ||||||||| |||||||| | | |||||||| |||||||||||||  |  |||||||||||    
T  7479040 tgcaccccatcaacactagaaagatcaagaactgcaccatcaaaggcaggcagagcactcttaacctcagcagtgaaatcaacatgaacaggtgtgtcaa 7478941  T
Q  227 ttacgctcatctgcaaggac 246  Q
    | ||  ||||||||||||||    
T  7478940 tcacagtcatctgcaaggac 7478921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 10850314 - 10850436
Alignment:
Q  40 gctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttatcaacagcaatggactggtcttgcaccccatcaa 139  Q
    ||||||||||||| |||  ||| ||| |||||||||||||||||||||||| ||| |||| ||||||||| || |||||| ||   |||||||||| |||    
T  10850314 gctcccttgtggtgaaggctgttgataaatacaagtcttggaagttgatatcttaacattagcttatcaaaagtaatggattgagtttgcaccccagcaa 10850413  T
Q  140 caccagaaagaacaagaacggca 162  Q
    | | ||||||| |||||| ||||    
T  10850414 cgctagaaagagcaagaatggca 10850436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 27969050 - 27969248
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  27969050 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 27969149  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  27969150 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 27969248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 28091537 - 28091339
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  28091537 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 28091438  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28091437 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28091339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 28101769 - 28101571
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  | |||||||||  | || ||||| ||||||||||| ||||  ||  ||| |||||||||||||| |||| ||  ||||  |||||    
T  28101769 aagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtcttat 28101670  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    ||| |  ||| || | |  |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28101669 caagaataatagatttggtttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28101571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 15305601 - 15305633
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||||||||||||||    
T  15305601 cataagctatttttatagcaaatgataaaataa 15305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 28097753 - 28097674
Alignment:
Q  126 ttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaaggcacgcagagcattgtcaacctcaggagtgaaat 205  Q
    |||||||||| |||||| | |||||||||||| | ||  |||||| ||| ||| ||| || |||||||||||||||||||    
T  28097753 ttgcaccccaccaacactacaaagaacaagaatgccacagtcaaaagcatgcaaagccttctcaacctcaggagtgaaat 28097674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 4026762 - 4026794
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaa 331  Q
    ||||||||||||||||||||| |||||||||||    
T  4026762 ataagctatttttatagcaaaagataaaataaa 4026794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 1094539 - 1094395
Alignment:
Q  7 aagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatatgttaccatttgcttat 106  Q
    |||||||||||||  |||||||||||| | |  ||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1094539 aagtttacctgatctacaacttcccacggatctgcttccttgtagtcaagactgttgatgaatacaattcttggaagttgatatgttaccatttgcttat 1094440  T
Q  107 caacagcaatggactggtcttgcaccccatcaacaccagaaagaa 151  Q
    | |||  ||||||| |||| |||||||||||||||| ||||||||    
T  1094439 ccacattaatggacaggtcctgcaccccatcaacactagaaagaa 1094395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 45806452 - 45806420
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  45806452 cataagctatttttatagcaaaagataaaataa 45806420  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33578043 - 33577954
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatat 90  Q
    |||||||| ||||||||||||| |||||||||| | || |||||||||||||||| ||||| ||| ||| |||||||||| |||| ||||    
T  33578043 aatctaaattttacctgattcaaaacttcccacggatttgctcccttgtggtcaacattgttgataaattcaagtcttggtagtttatat 33577954  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33577493 - 33577404
Alignment:
Q  1 aatctaaagtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttggaagttgatat 90  Q
    |||||||| ||||||||||||| |||||||||| | || |||||||||||||||| ||||| ||| |||  ||||||||| |||| ||||    
T  33577493 aatctaaattttacctgattcaaaacttcccacggatttgctcccttgtggtcaacattgttgataaatttaagtcttggtagtttatat 33577404  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 35445998 - 35446032
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||||||||||||||    
T  35445998 acataagctatttttatagcaaatgataaaataaa 35446032  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 12554407 - 12554440
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||| |||||||||||||||    
T  12554407 cataagctatttttatagtaaatgataaaataaa 12554440  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 16458104 - 16458072
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  16458104 cataagctatttttatagcaaaagataaaataa 16458072  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 17830097 - 17830131
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||||||||||||||    
T  17830097 acataagctatttttatagcaaatgataaaataaa 17830131  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 37473342 - 37473372
Alignment:
Q  297 acataagctatttttatagcaaatgataaaa 327  Q
    |||||||||||||||||||||||||||||||    
T  37473342 acataagctatttttatagcaaatgataaaa 37473372  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 29904704 - 29904737
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaat 332  Q
    ||||||||||||||||||||| ||||||||||||    
T  29904704 ataagctatttttatagcaaaagataaaataaat 29904737  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 15609033 - 15609065
Alignment:
Q  295 agacataagctatttttatagcaaatgataaaa 327  Q
    ||||||||||||||||||||||||| |||||||    
T  15609033 agacataagctatttttatagcaaaagataaaa 15609065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 1058201 - 1058167
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||||||||| ||||||||||    
T  1058201 acataagctatttttatagcaaatcataaaataaa 1058167  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 32976004 - 32976036
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  32976004 cataagctatttttatagcaaaagataaaataa 32976036  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 8147645 - 8147679
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    ||||||||||||||||||||||| |||||||||||    
T  8147645 acataagctatttttatagcaaaagataaaataaa 8147679  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 30536422 - 30536454
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    ||||||||||| |||||||||||||||||||||    
T  30536422 cataagctattattatagcaaatgataaaataa 30536454  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 31851397 - 31851431
Alignment:
Q  297 acataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||||| ||||||||||||||||    
T  31851397 acataagctatttttataacaaatgataaaataaa 31851431  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 42322004 - 42321972
Alignment:
Q  299 ataagctatttttatagcaaatgataaaataaa 331  Q
    |||||||||||||||| ||||||||||||||||    
T  42322004 ataagctatttttataacaaatgataaaataaa 42321972  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 43505900 - 43505932
Alignment:
Q  298 cataagctatttttatagcaaatgataaaataa 330  Q
    |||||||||||||||||||||| ||||||||||    
T  43505900 cataagctatttttatagcaaaagataaaataa 43505932  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 20880420 - 20880450
Alignment:
Q  297 acataagctatttttatagcaaatgataaaa 327  Q
    |||||||||||||||||||||||||||||||    
T  20880420 acataagctatttttatagcaaatgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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