View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_63 (Length: 445)
Name: NF5654_2D_low_63
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 183 - 425
Target Start/End: Complemental strand, 36113287 - 36113044
Alignment:
| Q |
183 |
tcctccaaagttcatagtgatcacgaaacctagcaaaacaacactagaacaccaaaaacaagtgttcacaactctctcactattgtcatcacgatatgga |
282 |
Q |
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| T |
36113287 |
tcctccaaagttcatagtgatcacgaaacctagcaaaacaacactaaaacaccaaaaacaagtgttcacaactctctcactattgtcatcacgatatgga |
36113188 |
T |
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| Q |
283 |
tcctcttcggaaaagtttgcaaatcctagcaaattaatctcattgtgttgaagaaccatcaaacttggtaggactattggatgttgattgatgatgtata |
382 |
Q |
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| T |
36113187 |
tcctcttcgaaaaagtttgcaaatcctagcaaattaatctcattgtgttgaagaaccatcaaacttggtaggactattggatgttgattgatgatgtata |
36113088 |
T |
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| Q |
383 |
ggtgctgat-ttttgtgttagttctgctgtctacggtcagttat |
425 |
Q |
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| T |
36113087 |
ggtgctgattttttgtgttagttctgctgccttcggtcagttat |
36113044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36113471 - 36113354
Alignment:
| Q |
1 |
aatcattgcagactagttaattgttgcagctaatataatcaaaattattaacaaagtttataaat--tgtgtggtctcgttaaaaaccaaatcaactcaa |
98 |
Q |
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| T |
36113471 |
aatcattgcagactagttaattgttgcagctaatataatcaaaattattaacaaagtttttaaattatgtctggtctcgttaaaaaccaaatcaactcaa |
36113372 |
T |
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| Q |
99 |
attgcgttggtttgcttc |
116 |
Q |
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| T |
36113371 |
attgcgttggtttgcttc |
36113354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 8691201 - 8691244
Alignment:
| Q |
12 |
actagttaattgttgcagctaatataatcaaaattattaacaaa |
55 |
Q |
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| T |
8691201 |
actagtaaattgttgcagccaatataatcaaaattattgacaaa |
8691244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 48624730 - 48624792
Alignment:
| Q |
14 |
tagttaattgttgcagctaatataatcaaaattattaacaaagtttataaattgtgtggtctc |
76 |
Q |
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| T |
48624730 |
tagttaattgttgccgctaatataatcaaaattgttgacatattttttaaattgtgtgttctc |
48624792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33639785 - 33639830
Alignment:
| Q |
1 |
aatcattgcagactagttaattgttgcagctaatataatcaaaatt |
46 |
Q |
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| T |
33639785 |
aatcattgaaaactagttaattgttgctgctaatataatcaaaatt |
33639830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13044245 - 13044197
Alignment:
| Q |
1 |
aatcattgcagactagttaattgttgcagctaatataatcaaaattatt |
49 |
Q |
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|||| ||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
13044245 |
aatcgttgcaaactagttaattgttgtaactaatataatcaaaattatt |
13044197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13114243 - 13114195
Alignment:
| Q |
1 |
aatcattgcagactagttaattgttgcagctaatataatcaaaattatt |
49 |
Q |
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|||| ||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
13114243 |
aatcgttgcaaactagttaattgttgtaactaatataatcaaaattatt |
13114195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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