View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_low_65 (Length: 431)

Name: NF5654_2D_low_65
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_low_65
NF5654_2D_low_65
[»] chr4 (6 HSPs)
chr4 (86-431)||(38265737-38266082)
chr4 (1-88)||(38266143-38266230)
chr4 (3-84)||(28236184-28236265)
chr4 (8-61)||(31339560-31339613)
chr4 (8-84)||(38903925-38904001)
chr4 (34-88)||(42639251-42639305)
[»] chr5 (3 HSPs)
chr5 (7-88)||(43558031-43558112)
chr5 (34-82)||(43475243-43475291)
chr5 (33-88)||(27890-27945)
[»] chr1 (7 HSPs)
chr1 (8-84)||(43423720-43423796)
chr1 (34-82)||(5338727-5338775)
chr1 (8-84)||(48431611-48431687)
chr1 (22-80)||(13827936-13827994)
chr1 (35-84)||(4380014-4380063)
chr1 (34-82)||(14226060-14226108)
chr1 (34-82)||(38868885-38868933)
[»] chr8 (5 HSPs)
chr8 (8-84)||(9695632-9695708)
chr8 (22-88)||(18474179-18474245)
chr8 (34-84)||(41444557-41444607)
chr8 (42-83)||(44681278-44681319)
chr8 (34-82)||(12611538-12611586)
[»] chr2 (3 HSPs)
chr2 (8-64)||(12026210-12026266)
chr2 (34-84)||(18958908-18958958)
chr2 (34-84)||(19024181-19024231)
[»] chr7 (13 HSPs)
chr7 (8-86)||(18605351-18605429)
chr7 (8-86)||(18637561-18637639)
chr7 (8-86)||(18650995-18651073)
chr7 (34-84)||(42187471-42187521)
chr7 (22-84)||(26742115-26742177)
chr7 (34-84)||(38920795-38920845)
chr7 (18-84)||(40169650-40169716)
chr7 (39-88)||(30200199-30200248)
chr7 (34-83)||(36101996-36102045)
chr7 (11-84)||(47848675-47848748)
chr7 (8-60)||(6420695-6420747)
chr7 (34-82)||(12966025-12966073)
chr7 (8-84)||(19262638-19262714)
[»] chr3 (4 HSPs)
chr3 (35-84)||(36820193-36820242)
chr3 (7-84)||(54128379-54128456)
chr3 (28-84)||(31337751-31337807)
chr3 (34-82)||(36868455-36868503)
[»] chr6 (1 HSPs)
chr6 (34-62)||(33997773-33997801)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 86 - 431
Target Start/End: Complemental strand, 38266082 - 38265737
Alignment:
Q  86 aacgcaattaatgaataattacataattacaaatatgaacaaacccacacaatgattactagtataaacacatccagcgcaactaatgattaataaaact 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266082 aacgcaattaatgaataattacataattacaaatatgaacaaacccacacaatgattactagtataaacacatccagcgcaactaatgattaataaaact 38265983  T
Q  186 gtctgattccattggtaataatagcacggttgatgaatgaacatactagctagatacgaatataggatcttacttacttacagggaagattgcggctcca 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265982 gtctgattccattggtaataatagcacggttgatgaatgaacatgctagctagatacgaatataggatcttacttacttacagggaagattgcggctcca 38265883  T
Q  286 caacggaacaaggcccctatagaaaccagcaaggccttcatttctatatactaacggaaacccatccactaaacccttagcaaaattacgttgaatttga 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265882 caacggaacaaggcccctatagaaaccagcaaggccttcatttctatatactaacggaaacccatccactaaacccttagcaaaattacgttgaatttga 38265783  T
Q  386 acacggattttaacagcttcaaaaggagctaaagtaacatcagcta 431  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  38265782 acacggatcttaacagcttcaaaaggagctaaagtaacatcagcta 38265737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38266230 - 38266143
Alignment:
Q  1 tcacgacatctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266230 tcacggcatctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 38266143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 28236265 - 28236184
Alignment:
Q  3 acgacatctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||||||||| ||| |||| |||||  ||||||| |||||| || ||||||||| | | |||| ||||||||||||||    
T  28236265 acgacatctacaagtcttctctctacatgcccaaaccatctaagcctattttccaccaacttttctactataggtgctaccc 28236184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 31339613 - 31339560
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccat 61  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||    
T  31339613 atctacaagtcttctctctacatgctcaaaccacctaagcttagtttcgaccat 31339560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 38903925 - 38904001
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||| ||| |||| ||||| |||||||| ||||||  ||||||||||||| | ||||| || ||||||||||    
T  38903925 atctacaagtcttctctccacatgctcaaaccaactaagccgagtttccaccatcttttctatgatcggtgctaccc 38904001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 42639251 - 42639305
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    |||||||||||||| | |||||||||||| | |||| ||||||||| ||||||||    
T  42639251 caaaccacctaagcctggtttccaccatcttttctactataggtgcaaccctaac 42639305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 43558031 - 43558112
Alignment:
Q  7 catctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    |||||||||| ||| |||| | |||  ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  43558031 catctacaagtcttctctctatatgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctaccctaac 43558112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 43475291 - 43475243
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    |||||||||||||| |||||||||||||| | |||| ||||||||||||    
T  43475291 caaaccacctaagcctagtttccaccatcttttctactataggtgctac 43475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 27945 - 27890
Alignment:
Q  33 tcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    ||||||||||||||| || |||||| |||| | |||| ||||||||||||||||||    
T  27945 tcaaaccacctaagcctattttccatcatcttttctactataggtgctaccctaac 27890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 43423796 - 43423720
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||| ||| |||| |||||| |||||||||||||| |||||||||||||| | |||| |||||||| |||||    
T  43423796 atctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccc 43423720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 5338775 - 5338727
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||||||||    
T  5338775 caaaccacctaagctcagtttccaccatcttttctactataggtgctac 5338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 48431611 - 48431687
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||| ||| |||| |||||  |||||||||||||| || ||||||||||| | |||| |||||| |||||||    
T  48431611 atctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctaccc 48431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 13827936 - 13827994
Alignment:
Q  22 tctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgct 80  Q
    |||| ||||| ||||||||||||| | |||||||||||||| | |||| ||||||||||    
T  13827936 tctctacatgttcaaaccacctaaccctagtttccaccatcttttctactataggtgct 13827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 4380063 - 4380014
Alignment:
Q  35 aaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||||| |||||||||||||||| | |||| ||||| ||||||||    
T  4380063 aaaccacctaaccttagtttccaccatcttttctactatagttgctaccc 4380014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14226060 - 14226108
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    |||||||||||||| || ||||||||||| | ||||| |||||||||||    
T  14226060 caaaccacctaagcctattttccaccatcttttctatgataggtgctac 14226108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 38868933 - 38868885
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    ||||||||||||||  ||||||||||||| | ||||| |||||||||||    
T  38868933 caaaccacctaagccgagtttccaccatcttttctatgataggtgctac 38868885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 9695708 - 9695632
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||| ||||| |||| |||||  ||||||||||||||  ||||||||||||| | |||| ||||||||||||||    
T  9695708 atctacaggacttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccc 9695632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 18474179 - 18474245
Alignment:
Q  22 tctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    |||| ||||| |||||||| |||||| |||||||||||||| | |||| |||||||||||| |||||    
T  18474179 tctctacatgctcaaaccaactaagcctagtttccaccatcatttctactataggtgctactctaac 18474245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 41444557 - 41444607
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||||||| | |||||||||||||| | |||| ||||||||||||||    
T  41444557 caaaccacctaaacctagtttccaccatcttttctactataggtgctaccc 41444607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 44681278 - 44681319
Alignment:
Q  42 ctaagcttagtttccaccatcctctctattataggtgctacc 83  Q
    ||||||||| ||||||||||| | ||||||||||||||||||    
T  44681278 ctaagcttattttccaccatcttttctattataggtgctacc 44681319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12611586 - 12611538
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    |||||||||||||| |||||||||||||| | |||| | ||||||||||    
T  12611586 caaaccacctaagcctagtttccaccatcttttctactttaggtgctac 12611538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 12026210 - 12026266
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcct 64  Q
    ||||||| | ||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  12026210 atctacaggtcttctctctacatggtcaaaccacctaagcctagtttccaccatcct 12026266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 18958958 - 18958908
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||||||||| || ||||||||||| | |||| ||||||||||||||    
T  18958958 caaaccacctaagcctattttccaccatcttttctactataggtgctaccc 18958908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 19024231 - 19024181
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||||||||||| ||||||||||| | || | ||||||||||||||    
T  19024231 caaaccacctaagcttactttccaccatcttttcaaatataggtgctaccc 19024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 18605351 - 18605429
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctacccta 86  Q
    ||||||| | ||| |||| ||||| |||||||||||||| |||||||| |||||| | | || ||||||||||||||||    
T  18605351 atctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctacccta 18605429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 18637639 - 18637561
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctacccta 86  Q
    ||||||| | ||| |||| ||||| |||||||||||||| |||||||| |||||| | | || ||||||||||||||||    
T  18637639 atctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctacccta 18637561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 18651073 - 18650995
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctacccta 86  Q
    ||||||| | ||| |||| ||||| |||||||||||||| |||||||| |||||| | | || ||||||||||||||||    
T  18651073 atctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctacccta 18650995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 42187521 - 42187471
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||||||||| || ||||||||||| | |||||||||||||||||||    
T  42187521 caaaccacctaagcctattttccaccatcttttctattataggtgctaccc 42187471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 26742115 - 26742177
Alignment:
Q  22 tctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||| ||||| ||||||||||||| | || ||||||||||| | |||| ||||||||||||||    
T  26742115 tctctacatgttcaaaccacctaatcctattttccaccatcttttctactataggtgctaccc 26742177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 38920845 - 38920795
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||| ||||| |||||||||||||| | |||| ||||||||||||||    
T  38920845 caaaccacttaagcctagtttccaccatcttttctactataggtgctaccc 38920795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 40169716 - 40169650
Alignment:
Q  18 cttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||| |||||  |||||||||||||| || ||||||||||| | |||| |||| |||||||||    
T  40169716 cttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctaccc 40169650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 30200199 - 30200248
Alignment:
Q  39 cacctaagcttagtttccaccatcctctctattataggtgctaccctaac 88  Q
    ||||||||| |||||||||||||| | |||| |||||||| |||||||||    
T  30200199 cacctaagcctagtttccaccatcttttctactataggtgttaccctaac 30200248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 36101996 - 36102045
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctacc 83  Q
    |||||||||||||| || |||||| |||| | ||||||||||||||||||    
T  36101996 caaaccacctaagcctattttccaacatcttttctattataggtgctacc 36102045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 47848748 - 47848675
Alignment:
Q  11 tacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||| ||| |||| |||||  |||||||||||||| || ||||||||||| | |||| |||||| |||||||    
T  47848748 tacaagtcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccc 47848675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 6420695 - 6420747
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccacca 60  Q
    ||||||||| ||| |||| |||||  |||||||||||||| ||||||||||||    
T  6420695 atctacaagtcttctctctacatgcccaaaccacctaagcctagtttccacca 6420747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12966073 - 12966025
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    |||||||||||||| |||||||||||||| | |||  ||||||||||||    
T  12966073 caaaccacctaagcatagtttccaccatcttttcttctataggtgctac 12966025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 19262638 - 19262714
Alignment:
Q  8 atctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||| | ||| |||| ||||| |||||||||||||||  |||||| |||||| | ||||  |||||||||||||    
T  19262638 atctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctacaataggtgctaccc 19262714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 36820193 - 36820242
Alignment:
Q  35 aaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    ||||||||||||| |||||||||||||| |  ||| ||||||||||||||    
T  36820193 aaaccacctaagcctagtttccaccatctttgctaatataggtgctaccc 36820242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 54128456 - 54128379
Alignment:
Q  7 catctacaagacttatctcaacatggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||||||| | ||| |||| |||||  |||||||||||||| || |||| |||||| | |||| ||||||||||||||    
T  54128456 catctacaggtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccc 54128379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 31337751 - 31337807
Alignment:
Q  28 catggtcaaaccacctaagcttagtttccaccatcctctctattataggtgctaccc 84  Q
    |||| ||||||||| ||||| ||||||| |||||| | |||| ||||||||||||||    
T  31337751 catgctcaaaccacttaagcctagtttcaaccatcttttctactataggtgctaccc 31337807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 36868455 - 36868503
Alignment:
Q  34 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 82  Q
    |||||||||||||| || ||||||||||| ||||||  |||||||||||    
T  36868455 caaaccacctaagcctactttccaccatcttctctaccataggtgctac 36868503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 33997773 - 33997801
Alignment:
Q  34 caaaccacctaagcttagtttccaccatc 62  Q
    |||||||||||||||||||||||||||||    
T  33997773 caaaccacctaagcttagtttccaccatc 33997801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University