View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_69 (Length: 422)
Name: NF5654_2D_low_69
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_69 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 5261562 - 5261167
Alignment:
| Q |
20 |
aggtgcaccacattcacccatggcacgtaatgtcaaacatttccaattttttgtttatagaaaatggaatgccagtattcaactatttgttcttattgtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5261562 |
aggtgcaccacattcacccatggcacgtaatgtcaaacatttccaattttttgtttatagaaaatggaatgccagtattcaactatttgttcttattgtg |
5261463 |
T |
|
| Q |
120 |
ttgttaacaagagggtgttcttgagtaattccattttgtcgttacaacatgatataataaagttctttggggttgataacattctgcactggcataataa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5261462 |
ttgttaacaagagggtgttcttgagtaattccattttgtcgttacaacatgatataataaagttctttggggttgataacattctgcactggcataataa |
5261363 |
T |
|
| Q |
220 |
agtaaataaatgtactttgtgatgattttggctactgcatag--ctctattgataatagcctcaaacagtggttgcctgcaagaatttcctcaatttgct |
317 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5261362 |
aataaataaatgtactt----gtgattttggctactgcatagctctctattgat-atagcctcaaacagtggttgcctgcaagaatttcctcaattttcc |
5261268 |
T |
|
| Q |
318 |
atgctagattgttacatgccaaatatagatcatcatttaattttatgttttgcatagcatcaaacttctaccgagcctttgatttctgtgtcacattagc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5261267 |
atgctagattgttacatgccaaatatagatcatcattttat----tgttttgcatagcatcaaacttctaccgagcctttgatttctgtgtcacattagc |
5261172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 5277981 - 5277931
Alignment:
| Q |
370 |
catagcatcaaacttctaccgagcctttgatttctgtgtcacattagcaca |
420 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5277981 |
catagcatcaaacttctaccgagcctctgatttcagtgtcacattagcaca |
5277931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 5278287 - 5278225
Alignment:
| Q |
20 |
aggtgcaccacattcacccatggcacgtaatgtcaaacatttccaattttttgtttatagaaa |
82 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||||||||||||||||||||| |||| |
|
|
| T |
5278287 |
aggtgcaccacattcacccacggcatgttatatcaaacatttccaattttttgtttattgaaa |
5278225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 5246763 - 5246701
Alignment:
| Q |
288 |
ggttgcctgcaagaatttcctcaatttgctatgctagat---tgttacatgccaaatatagat |
347 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
5246763 |
ggtttcctgccagaatttcctcaatttgctctgctagattcatgttatatgccaaatatagat |
5246701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University