View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_7 (Length: 1007)
Name: NF5654_2D_low_7
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 415 - 904
Target Start/End: Original strand, 44965361 - 44965850
Alignment:
| Q |
415 |
ttttttctgtgaaactaaacatcgaacaagattttcattctactccaatgcttagtagagataacagcactagaagctttggtagcaaaattcggaatca |
514 |
Q |
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| T |
44965361 |
ttttttctgtgaaactaaacatcgaacatgattttcattctactccaatgcttagtagagataacagcacaagaagctttggtagcaaaattcggaatca |
44965460 |
T |
|
| Q |
515 |
aggaacagaggaacctaaaacagagcgagtttcaaaggagattttgcagaaatatttgaagctgattaagcctctttatgttaaggtttcgaagaggtat |
614 |
Q |
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| T |
44965461 |
aggaacagaggaacctaaaacagagcgagtttcaaaggagattttgcagaaatatttgaagctgattaagcctctttatgttaaggtttcgaagaggtat |
44965560 |
T |
|
| Q |
615 |
ggtgataaggtgaaattctccggcgaggggatgacagtgacggcttcgccgtcgtcttcaccggcggttggctctttgaggaaagagaaacaggggagtt |
714 |
Q |
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| T |
44965561 |
ggtgataaggtgaaattctccggcgaggggatgacagtgacagcttcaccgtcgtcttcaccggcggttggctctttgaggaaagagaaacaggggagtt |
44965660 |
T |
|
| Q |
715 |
ttccggctgggatgagagtggtaacgaagcatttgggtaagagtaggtcatcgggtacggtggccggagccagttctccggcgaacaggagtgatgatac |
814 |
Q |
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| T |
44965661 |
ttccggctgggatgagagtggtaacgaagcatttgggtaagagtaggtcatcgggtacggtggccggagctagttctccggcgaacaggagtgatgatac |
44965760 |
T |
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| Q |
815 |
gctgttgcagcagcatgatggaattcaaagtgctattcttcattgcaagagatccttcaattccagaggtaaaatttgtttcaaaattgg |
904 |
Q |
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| T |
44965761 |
gttgttgcagcagcatgatggaattcaaagtgctattcttcattgcaagagatccttcaattccagaggtaaaatttgtttcaaaattgg |
44965850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 44964949 - 44965276
Alignment:
| Q |
3 |
aactcttccatggatgctttaaacttcctcaagttctggaagaacaacacaacaacctccaacatcactgttcctcctcatcttgttgtagaaacagaca |
102 |
Q |
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| T |
44964949 |
aactcttccatggatgctttaaacttcctcaagttctggaagaacaacacaacaacctccaacatcactgttcctcctcatcttgttgtagaaacagaca |
44965048 |
T |
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| Q |
103 |
gtgaatcagacgaagatgactcattcttcgacttagaacttaccatgagcgacgaccaacatgtcaaaaccaaaactgaaactaatgttcctcaaaaaac |
202 |
Q |
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| T |
44965049 |
gtgaatcagacgaagatgactcattcttcgacttagaacttaccatgagcgacgaccaacatgtcaaaaccaaaactgaaaataatgttcctcaaaaaac |
44965148 |
T |
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| Q |
203 |
aacacttcctatgtctccaaacgaaccaatctcaaaaagaaaagtgcttccaattgaacccatttctaaacctcaatcacccatttcacttctaagatca |
302 |
Q |
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| T |
44965149 |
aacacttcctatgtctccaaacgaaccaatctcaaaaagaaaagtgcttccaattgaacccatttctaaacctcaatcacccatttcacttctaagatca |
44965248 |
T |
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| Q |
303 |
gcaccgagtttcagaatctttaccttca |
330 |
Q |
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| T |
44965249 |
gcaccgagtttcagaatctttaccttca |
44965276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 805 - 875
Target Start/End: Original strand, 2502541 - 2502611
Alignment:
| Q |
805 |
gtgatgatacgctgttgcagcagcatgatggaattcaaagtgctattcttcattgcaagagatccttcaat |
875 |
Q |
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| T |
2502541 |
gtgatgattcgcttttgcagcagcaagatggaattcaaggagccattttacactgcaagagatccttcaat |
2502611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 845
Target Start/End: Original strand, 28697958 - 28698056
Alignment:
| Q |
746 |
tttgggtaagagtaggtcatcgggtacggtggccggagccagttctccggcgaacaggagtgatgatacgctgttgcagcagcatgatggaattcaaagt |
845 |
Q |
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| T |
28697958 |
tttgggtaagagtaggtcgccggataccgtggccggagttggtactccggcgaataagagtgatga-atgttgttgcagcaagatgatggaatccaaagt |
28698056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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